Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3060 ATGAATGCCATAGCTACTGCTTCTGCTCTATCTCTTCCTATCTTTGGTAGAACTTCCAAGCTTGATACTAAAAGGGTTTTTAAAGGTAAATTTGGAGTGTTTGCGGTGTTTGGAGAAGCAGACAAGAAAAATACATGGGGTGCAATCTTTGATGTAGAGGACCCAAGATCTAGAGTGGTACAAAGTAAAGGGAAAGTTTTGGATGCATTTCAAGCTTTAGAAGTGGCTAGACAGGATATTCAATATTGTGATTGGCGAGCTCGGCAAGATGTGCTTACCATCATGCTCCTCCACGAAAAGGTGGTTGAAGTTCTTAATCCTCTAGCTCGTGAATTCAAGTCGATCGGCACCATGAAAAAGGATCTAGCTGGTTTGCAGGACGAATTAGCAGAAGCACACAGACAGGTTCATATATCTGAAGCAAGAGTTTCCACCGCTTTAGATAAACTTGCATACATGGAAGAATTGGTAAACGACAAGCTATTACAAGACAGAAGCACGGCTGCAATTGCTGAGCCATTGTCTTCTCCAAGTACTTCTGAAAAATCTGTACATACTGAACGACGAAGAAAGCCGAGGAAAAGCTTGAATGTATCAGGTCCAGTTCAGTCATACCATCCTAATTTAAAGAATTTCTGGTATCCTGTTGCTTTCTCTAACGACTTAAAGGATGATACCATGGTCCCAATGGAATGTTTTGAGGAACCATGGGTTATCTTTAGGGGTAAAGATGGCAAGCCTGGATGTGTCCAGAATACCTGTGCACACCGAGCATGTCCTCTGCACCTTGGTTCTGTAAACGAGGGTCGTATCCAATGCCCCTACCACGGCTGGGAATATACGACGGACGGAAAATGCGAGAAAATGCCATCTACTCGAATGCTAAATGTAAAGATAAAGTCAATTCCATGTTTTGAGAAAGAGGGGATGATCTGGATTTGGCCTGGCAATGATCCCCCAGCAGCAACAATTCCATCGTTACTACCTCCTTCCGGTTTTGTAATCCATGCCGAGATTGTCATGGAACTTCCAGTTGAACATGGTTTACTTTTGGACAACCTTTTGGATCTTGCGCATGCACCTTTTACTCATACTTCAACTTTTGCTAAGGGATGGAGTGTTCCCAGCTTTGTGAATTTTTTGACACCCGCGTCTGGCCTACAAGGATACTGGGATCCCTATCCAATTGACATGGAGTTTCGACCACCTTGTATGGTTCTATCAACCATTGGAATTTCGAAGCCCGGGAAACTGGAAGGACAAAGCACCAAAGAATGTGAAACACACCTTCATCAACTGCATGTCTGCTTACCTTCATCAAAAGATAAAACAAGATTGCTATACAGAATGTCGTTGGATTTCGCTCCCCTTCTTAAGCATATACCTTTTATGGAACATCTATGGAGGCATTTTGCAGCACAGGTTTTAAATGAGGATCTACGACTAGTAGTAGGGCAACAAGAGAGAATGAACAATGGCGCAAATGTATGGAATGTGCCGGTTACCTATGACAAGCTTGGAGTAAGGTATAGACTTTGGAGGGATGCATTGGAAAAAGGCGATAAGCAACTACCCTTCGACACACATAACTAA 1593 0.4288 MNAIATASALSLPIFGRTSKLDTKRVFKGKFGVFAVFGEADKKNTWGAIFDVEDPRSRVVQSKGKVLDAFQALEVARQDIQYCDWRARQDVLTIMLLHEKVVEVLNPLAREFKSIGTMKKDLAGLQDELAEAHRQVHISEARVSTALDKLAYMEELVNDKLLQDRSTAAIAEPLSSPSTSEKSVHTERRRKPRKSLNVSGPVQSYHPNLKNFWYPVAFSNDLKDDTMVPMECFEEPWVIFRGKDGKPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYTTDGKCEKMPSTRMLNVKIKSIPCFEKEGMIWIWPGNDPPAATIPSLLPPSGFVIHAEIVMELPVEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSFVNFLTPASGLQGYWDPYPIDMEFRPPCMVLSTIGISKPGKLEGQSTKECETHLHQLHVCLPSSKDKTRLLYRMSLDFAPLLKHIPFMEHLWRHFAAQVLNEDLRLVVGQQERMNNGANVWNVPVTYDKLGVRYRLWRDALEKGDKQLPFDTHN* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3060 530 PANTHER CHLOROPHYLLIDE A OXYGENASE, CHLOROPLASTIC-LIKE 69 527 - -
Tpr1g3060 530 Pfam Vanillate O-demethylase oxygenase C-terminal domain 346 370 IPR044043 GO:0016491
Tpr1g3060 530 PANTHER IRON-SULFUR DOMAIN CONTAINING PROTEIN 69 527 - -
Tpr1g3060 530 Pfam Pheophorbide a oxygenase 400 495 IPR013626 GO:0010277
Tpr1g3060 530 SUPERFAMILY Bet v1-like 309 518 - -
Tpr1g3060 530 MobiDBLite consensus disorder prediction 169 201 - -
Tpr1g3060 530 SUPERFAMILY ISP domain 208 318 IPR036922 GO:0051537
Tpr1g3060 530 ProSitePatterns Bacterial ring hydroxylating dioxygenases alpha-subunit signature. 254 276 IPR015881 GO:0005506|GO:0051537
Tpr1g3060 530 Coils Coil 115 142 - -
Tpr1g3060 530 Gene3D - 336 525 - -
Tpr1g3060 530 Pfam Rieske [2Fe-2S] domain 213 295 IPR017941 GO:0051537
Tpr1g3060 530 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 213 313 IPR017941 GO:0051537
Tpr1g3060 530 Gene3D - 207 330 IPR036922 GO:0051537
Tpr1g3060 530 CDD Rieske_RO_Alpha_Cao 196 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3060 Tpr-Chr1 35060734 35065848 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3060 K13600 - gmx:100805998 964.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3060 1 35060734 35065848 Tpr1g3060 1 35060734 35065848 ECH