Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3049 ATGAAATTCATGGCACTAATTGAATTTTTTATTGCTCTTATTTTATGTACTACTTCCACAATTTCTGCCACGGTGGATTGCGATTTTCCTGCCATTTTCAGCTTTGGTGCTTCCAACGCTGATACCGGTGGGTTGGCTGCTGCCTTTCAAGCACCGCCATTGCCATATGGAGAAACTTTTTTCAATAGATCAACCGGAAGATACTCTGATGGCAGAATCATTCTTGATTTCATAGCACAAAACTTTGGACTTCCCTATCTCAGTGCATATCTTAATTCTCTCGGGTCCAACTTCACAAATGGTGCAAACTTTGCAACATTTGGGTCAACAATTAGAATCCCTACTAGTATTATACCTCAAGGTAGACTCAGTCCATTTTCCTTTCGAATTCAATATATTCAATTCAGAGATTTCATACCCAAAACAAAATTCACCAGGGATCAAGGAGGTATATTTGCAACATTGGTTCCTAAAGAAGATTATTTTTCTAAAGCCTTATACACATTTGATATTGGTCAAAACGATCTTACGGCTGGCTTCTTTAGTAATGCGACTATACAACAAGTCAATTCTACTATACCCGATATAATAAACAGTTTCATAGATAATATCAAGAACATATACAATTTAGGGGCTGTATCGTTTTGGATACATAATACAGGACCAATTGGATGTCTTCCATTAATTTTGGCTAATTTTCCATCCTCCATAAAGGATAGTTATGGTTGCGCAACACAATATAATGAAGTATCTCAATATTTTAATTTAAAGTTGAAGGAAGCTTTAACTCAACTTCGTAATGACCTTCCTCTTGCTGCAATCACATATGTAGATATTTACTCTCCTAAATACTCTCTTTTTCAAAATCCAGAAAAATACGGGTTTGAGCTTCCACTTGTGGCATGTTGTGGCTATGGAGGAGAGTACAATTATAACATTCGTGTTGGATGTGGAGAAACCATAAATATAAATGGCACACAAAGTGTTGTGAGTTCGTGTAAAAATCCATCTACGAGAGTGATATGGGATGGGATTCATTATACTGAGGCAGCTAACAAGTTTGTCTTTGATCAAATCTCTACTGGATGTTTTACGGATCCTCCCATTTCCTTAAATATGGCATGTAAAAGAAAGTTCACTTGA 1143 0.364 MKFMALIEFFIALILCTTSTISATVDCDFPAIFSFGASNADTGGLAAAFQAPPLPYGETFFNRSTGRYSDGRIILDFIAQNFGLPYLSAYLNSLGSNFTNGANFATFGSTIRIPTSIIPQGRLSPFSFRIQYIQFRDFIPKTKFTRDQGGIFATLVPKEDYFSKALYTFDIGQNDLTAGFFSNATIQQVNSTIPDIINSFIDNIKNIYNLGAVSFWIHNTGPIGCLPLILANFPSSIKDSYGCATQYNEVSQYFNLKLKEALTQLRNDLPLAAITYVDIYSPKYSLFQNPEKYGFELPLVACCGYGGEYNYNIRVGCGETININGTQSVVSSCKNPSTRVIWDGIHYTEAANKFVFDQISTGCFTDPPISLNMACKRKFT* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3049 380 Pfam GDSL-like Lipase/Acylhydrolase 32 359 IPR001087 GO:0016788
Tpr1g3049 380 CDD SGNH_plant_lipase_like 30 362 IPR035669 -
Tpr1g3049 380 Gene3D SGNH hydrolase 19 362 IPR036514 -
Tpr1g3049 380 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE 10 379 - -
Tpr1g3049 380 PANTHER ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN 10 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3049 Tpr-Chr1 34936837 34940405 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3049 30 366 Acyl Lipid Metabolism Gene Families AT4G10950 27.586 1.99e-32 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3049 - - cam:101514585 585.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3049 1 34936837 34940405 Tpr1g3049 1 34936837 34940405 ECH