Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3037 ATGTGTCCCCTAACTCCTAAAGAATTGGAGCTGATTTTTGAGAAGCTAGACATAAATAGTGATGGATTTTTAACCCTTGAGGAGCTAAACCTTTTGTTAGAGAGAACAGGTTTCAAGTTTAGCATAGAGGAGCTAGAATCTCTAGTGGGAAAAAAGAGTCTAGACTTGAGTGAGTTCATGTTCTTTTATGATTCCATATTGAATCACAAAAATGGTGATGTTGATGAGATTGAAGAGATAGAAAGTGACCTTTTGAAGGCTTTTAAGGTGTTTGATTTGGATGGAGATGGATTCATCACTAGTCAAGAATTGGAATATGTGTTGAAGAGACTTGGCATGTGGGATGAAGAAAAGGATAGTAGATCAATGATTTACTCATATGACACTAATTTAGATGGCAAGCTTGATTTCAAGGAATTTAAGAACATGATGTTGCTAACACAACAACCTATTTAG 456 0.3553 MCPLTPKELELIFEKLDINSDGFLTLEELNLLLERTGFKFSIEELESLVGKKSLDLSEFMFFYDSILNHKNGDVDEIEEIESDLLKAFKVFDLDGDGFITSQELEYVLKRLGMWDEEKDSRSMIYSYDTNLDGKLDFKEFKNMMLLTQQPI* 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3037 151 ProSiteProfiles EF-hand calcium-binding domain profile. 79 114 IPR002048 GO:0005509
Tpr1g3037 151 ProSiteProfiles EF-hand calcium-binding domain profile. 4 39 IPR002048 GO:0005509
Tpr1g3037 151 PANTHER CALCIUM-BINDING PROTEIN CML44-RELATED 3 148 - -
Tpr1g3037 151 Pfam EF-hand domain pair 82 144 IPR002048 GO:0005509
Tpr1g3037 151 SMART efh_1 83 111 IPR002048 GO:0005509
Tpr1g3037 151 SMART efh_1 119 147 IPR002048 GO:0005509
Tpr1g3037 151 SMART efh_1 8 36 IPR002048 GO:0005509
Tpr1g3037 151 ProSitePatterns EF-hand calcium-binding domain. 92 104 IPR018247 -
Tpr1g3037 151 ProSiteProfiles EF-hand calcium-binding domain profile. 115 150 IPR002048 GO:0005509
Tpr1g3037 151 Gene3D - 68 145 - -
Tpr1g3037 151 Gene3D - 6 64 - -
Tpr1g3037 151 ProSitePatterns EF-hand calcium-binding domain. 17 29 IPR018247 -
Tpr1g3037 151 Pfam EF hand 12 32 IPR002048 GO:0005509
Tpr1g3037 151 CDD EFh 83 144 IPR002048 GO:0005509
Tpr1g3037 151 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 3 148 - -
Tpr1g3037 151 SUPERFAMILY EF-hand 7 146 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3037 Tpr-Chr1 34822433 34823204 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3037 4 145 EF-hand Containing Proteins AT1G21550 44.595 4.50e-34 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3037 K13448 - gmx:100779760 216.468