Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2987 ATGGCTCTTGCTGTACTGCTTCTTTTTTACCTTCTCTCCTTCTCTTTTCATGGAGATGCCTATATTGGTGTCAACATTGGTACAGATGTAACCAACATGCCAAGTCCAACAGAAACCGTGGCTCTTCTCAAGGCTCAAAGTATACAACATGTGAGACTCTATGACGCCGACAGATCCATGCTTCTTGCACTTGCCAAGACTGGAATCCAAGTAATTGTTTCTGTTCCAAATGACCAGATACTCGGAATCGGTCAGTCCAATACCACTGCCGCAAATTGGGTTGCTCGTAATATCATAGCTCATGTTCCTTCTACCAACATCACTGCCATAGCTGTTGGTTCCGAAGTCTTAACTTCACTCCCAAATGCAGCTCCTGTCCTTGTATCCGCGCTACAGTTCATTCATTCTGCACTTGTCGCGGCTAATCTTGATGATCAAATTAAAGTATCTACTCCACTTTCTACTTCCATCATACTTGACTCTTTCCCACCTTCTCAAGCGTTTTTCAATCGAACTTGGGATCCGGTCATGACTCCTCTACTTAAATTTTTGCAGTCGACCAGTTCATATCTTATGCTCAATGTATATCCTTATTATGATTACATGCAATCCAATGATGTAATCCCTCTAGATTATGCTCTATTCCGTCCCTTACCGCCAAATAAAGAAGCTGTCGACAGTAACACTCTCCTGCATTATACTAATGTTTTCGATGCAATTATCGATGCTGCTTATTTTGCAATGTCATATTTGAAGTTTACCAATATCCCTATTTTAGTTACCGAGTCAGGATGGCCTTCTAAAGGTGGTTCGACTGAGCCCGACGCAACTCCAGATAATGCGAACACCTACAATAGTAATCTCATCCGACATGTTTTGAACAATACGGGGACTCCTAAACAACCTAGAATCACAGTTAGTACGTATATTTATGAGCTTTATAATGAAGACTTGAGAACAGGTCCGGCATCCGAGAGCAATTGGGGGCTTTTTTATGCGAACGGAGCACCGGTTTATACCCTACACTTGACTGGGGCTGGTACTTTATTTGCAAACGATACAACGAATCAAACCTTTTGTGTCGCTAAGAGTAGCGCTGATAGTAAGATGATACAGGCGGCACTTGATTGGGCTTGTGGACCAGGGAAGGTGGATTGTTCGCCTTTGCTGCATGGTCAACCGTGTTCTGAACCAGATAATGTAGTTGCACATGCTACTTATGCTTTTAATGCTTATTATCAGAAGATGGATAAATCTCCTGGGAGCTGTGACTTCAAAGGAGTTGCCTCAGTCACCACCACAAACCCAAGTCATGGTTCCTGTATATTTCCAGGAAGTGGTGGTAAAAATGGCACAAGCATAAATGGCACAGCACTAGCCCCTACCATCAATTCAACAGATTCAGGCTCATTTTCACAATACTACAATGGTGGATATTTCACCAGCTATATGATTCTTGCACTACTTTTGAGTGCACTTGTTGTCTTGTAA 1491 0.4245 MALAVLLLFYLLSFSFHGDAYIGVNIGTDVTNMPSPTETVALLKAQSIQHVRLYDADRSMLLALAKTGIQVIVSVPNDQILGIGQSNTTAANWVARNIIAHVPSTNITAIAVGSEVLTSLPNAAPVLVSALQFIHSALVAANLDDQIKVSTPLSTSIILDSFPPSQAFFNRTWDPVMTPLLKFLQSTSSYLMLNVYPYYDYMQSNDVIPLDYALFRPLPPNKEAVDSNTLLHYTNVFDAIIDAAYFAMSYLKFTNIPILVTESGWPSKGGSTEPDATPDNANTYNSNLIRHVLNNTGTPKQPRITVSTYIYELYNEDLRTGPASESNWGLFYANGAPVYTLHLTGAGTLFANDTTNQTFCVAKSSADSKMIQAALDWACGPGKVDCSPLLHGQPCSEPDNVVAHATYAFNAYYQKMDKSPGSCDFKGVASVTTTNPSHGSCIFPGSGGKNGTSINGTALAPTINSTDSGSFSQYYNGGYFTSYMILALLLSALVVL* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2987 496 Gene3D - 352 444 - -
Tpr1g2987 496 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 10 487 IPR044965 GO:0004553|GO:0005975
Tpr1g2987 496 SMART X8_cls 358 443 IPR012946 -
Tpr1g2987 496 Pfam Glycosyl hydrolases family 17 22 342 IPR000490 GO:0004553|GO:0005975
Tpr1g2987 496 Pfam X8 domain 359 429 IPR012946 -
Tpr1g2987 496 ProSitePatterns Glycosyl hydrolases family 17 signature. 256 269 IPR000490 GO:0004553|GO:0005975
Tpr1g2987 496 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE-LIKE PROTEIN 10 487 - -
Tpr1g2987 496 Gene3D Glycosidases 21 348 - -
Tpr1g2987 496 SUPERFAMILY (Trans)glycosidases 22 342 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2987 Tpr-Chr1 34331529 34336169 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2987 19 437 Glycoside Hydrolase AT2G01630 77.804 0.0 687
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2987 K19891 - gmx:100810169 839.721
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g2987 1 34331529 34336169 Tpr1g2987 1 34331529 34336169 ECH