Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2976 ATGGGTTTCCGATCCCTCTTCAACCGAAAGAAGAAACTTCTAAAAAAATCGACATCGTCTTCTCCAACAACCGTAACCGAAAACACCACCTTTATATCCCGTACCCCGTCCCTCTCATCACGTGTCCATTTTGCCGAGGATTTGGAACATGTGTTTCAAAAATTTGATGTCAACGGTGATGGCAAAATCTCTTCTTCTGAATTAGGGTCCATCATGAAAAGCCTAGGACAGCCATCAACGGAAGAAGAACTCGATAAAATGATCCGTGAGGTTGATGCTGACGGCGATGGTTACATTAACCTTGAGGAGTTTATTGAGTTAAATACCAAAGACATTGACCCCAATGAGGTTTTGGAAAATCTCAAAGATGCATTTTCCGTTTTTGACCTTGATAAAAATGGTTCGATATCAGCTGAGGAATTACACAATGTTATGGTCAGCCTTGGTGATCAATGTTCCCTCGCCGAGTGTCAAAAAATGATAGGCGGTGTTGATAGCGATGGTGATGGAATGATCGATTTTGAAGAGTTTAAGAAGATGATGTTGGGCTCAACCTTTGGGTCCATGGAAAGAACAAATAACGGTGAAATAGAAACCTAA 600 0.4133 MGFRSLFNRKKKLLKKSTSSSPTTVTENTTFISRTPSLSSRVHFAEDLEHVFQKFDVNGDGKISSSELGSIMKSLGQPSTEEELDKMIREVDADGDGYINLEEFIELNTKDIDPNEVLENLKDAFSVFDLDKNGSISAEELHNVMVSLGDQCSLAECQKMIGGVDSDGDGMIDFEEFKKMMLGSTFGSMERTNNGEIET* 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2976 199 PANTHER CALCIUM-BINDING PROTEIN CML25-RELATED 24 193 - -
Tpr1g2976 199 CDD EFh 121 181 IPR002048 GO:0005509
Tpr1g2976 199 ProSiteProfiles EF-hand calcium-binding domain profile. 79 114 IPR002048 GO:0005509
Tpr1g2976 199 ProSiteProfiles EF-hand calcium-binding domain profile. 152 187 IPR002048 GO:0005509
Tpr1g2976 199 ProSiteProfiles EF-hand calcium-binding domain profile. 116 151 IPR002048 GO:0005509
Tpr1g2976 199 SMART efh_1 120 148 IPR002048 GO:0005509
Tpr1g2976 199 SMART efh_1 47 75 IPR002048 GO:0005509
Tpr1g2976 199 SMART efh_1 156 184 IPR002048 GO:0005509
Tpr1g2976 199 SMART efh_1 83 111 IPR002048 GO:0005509
Tpr1g2976 199 PANTHER CALCIUM BINDING PROTEIN 24 193 - -
Tpr1g2976 199 ProSitePatterns EF-hand calcium-binding domain. 92 104 IPR018247 -
Tpr1g2976 199 SUPERFAMILY EF-hand 46 183 IPR011992 -
Tpr1g2976 199 Pfam EF-hand domain pair 119 181 IPR002048 GO:0005509
Tpr1g2976 199 Pfam EF-hand domain pair 46 106 IPR002048 GO:0005509
Tpr1g2976 199 CDD EFh 47 107 IPR002048 GO:0005509
Tpr1g2976 199 ProSitePatterns EF-hand calcium-binding domain. 56 68 IPR018247 -
Tpr1g2976 199 ProSitePatterns EF-hand calcium-binding domain. 129 141 IPR018247 -
Tpr1g2976 199 ProSiteProfiles EF-hand calcium-binding domain profile. 43 78 IPR002048 GO:0005509
Tpr1g2976 199 Gene3D - 112 195 - -
Tpr1g2976 199 Gene3D - 8 111 - -
Tpr1g2976 199 ProSitePatterns EF-hand calcium-binding domain. 165 177 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2976 Tpr-Chr1 34163057 34164246 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2976 6 188 EF-hand Containing Proteins AT1G24620 60.109 3.01e-70 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2976 K13448 - oeu:111396559 249.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g2976 1 34163057 34164246 Tpr1g2976 1 34163057 34164246 ECH