Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2962 ATGGATCAAGGAACAGACTTTAAACTCACCCAGATGAAAAAGTCTGTTGAAAAGCTTGGTTCTTCTACACAGGGTTATGGGGACCCAACATTAATGAGGTTTATGATTGCACGGTCAATGGAATCAGATAAAGCAGCAAATATGTTTGTCCAATGGCAGAAATGGAGGGATACTATGGTTCCTAATGGATTCATTTCAGATTCTGAAGTTCCTTATGAATTAGAAACTAGAAAGATCTTTTTGCAGGGTTTGTCTCAAGATAAATATCCTGTGATGATTGTTCAAGCAAGTAGACACTTCCCTTCCAAGGATCAAGATCAATTCAAGAAATTTATTGTACATTTACTGGACAAGACAATCGCGAGTGCTTTCAAGGGAAGGGAGGTAGGAAATGAAAAGTTGATTGGAGTTCTTGATCTGCAAAATATTGCATATAAGAATGTCGATGCACGTGGTTTAATTATGGGATTTCAATTTTTGCAGGGTTACTACCCCGAGCGTTTAGCTAAGTGTTATATTTTACATATGCCATGGTTTTTTGTGAGTGTTTGGAGACTAGTTTCTACCTTCCTAGACAAGGCAACACAAGATAAGATTGTAATTATAAGCAATGAGGATGAGAAAAAAAAGTTCATAAGTGATGTTGGTGAAGATATTCTTCCAGAAGAGTATGGTGGAAGAGCAAAGCTTGTACCTATCCAAGATGTTGAAGTGACACCATTGGAAAATGGAAGAACACATTGA 744 0.3723 MDQGTDFKLTQMKKSVEKLGSSTQGYGDPTLMRFMIARSMESDKAANMFVQWQKWRDTMVPNGFISDSEVPYELETRKIFLQGLSQDKYPVMIVQASRHFPSKDQDQFKKFIVHLLDKTIASAFKGREVGNEKLIGVLDLQNIAYKNVDARGLIMGFQFLQGYYPERLAKCYILHMPWFFVSVWRLVSTFLDKATQDKIVIISNEDEKKKFISDVGEDILPEEYGGRAKLVPIQDVEVTPLENGRTH* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2962 247 SUPERFAMILY CRAL/TRIO domain 67 229 IPR036865 -
Tpr1g2962 247 PANTHER OS03G0850700 PROTEIN 1 239 - -
Tpr1g2962 247 Pfam CRAL/TRIO domain 75 226 IPR001251 -
Tpr1g2962 247 SMART sec14_4 73 229 IPR001251 -
Tpr1g2962 247 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 67 232 IPR001251 -
Tpr1g2962 247 SUPERFAMILY CRAL/TRIO N-terminal domain 8 65 IPR036273 -
Tpr1g2962 247 Gene3D - 2 238 IPR036865 -
Tpr1g2962 247 PANTHER SEC14 CYTOSOLIC FACTOR-LIKE 1 239 - -
Tpr1g2962 247 CDD SEC14 80 226 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2962 Tpr-Chr1 33991997 34002549 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2962 12 203 Acyl Lipid Metabolism Gene Families AT5G47730 24.757 4.73e-12 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2962 - - gmx:100811048 406.371
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g2962 1 33991997 34002549 Tpr1g2962 1 33991997 34002549 ECH