Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2869 ATGGAGGTTGTTTTAGCATCTTCCTCTGTTGATGATGGGATAGGTTGTTGGGACATTCATACAGGTGCTGAACAGCCACGCTATAAATCATGTTCTTCCCCTTTTCATGGTCTAGTCTCTCTCGGTTCTCGCTTCCTTGCTTCTTCTCAGCTTCAACACTCATCTTCTACCTCTGGCTCCGTTTTCTTCTGGTCCTTCTCAAAGCCTCAAGTTGAAGTTAAGAGCTTTCCTGTTGAACCTATTAAGCCACTTGCTGGTAATCACCAAGGGACCTATCTAGCTGGTGGAGCTTTGTCAGGTGATATATACTTGTGGGAGGTTGAGACTGGCAGATTACTTAAGAAGTGGCATGCTCATTTAAGGGCCATAACTTGCCTGGTATTTTCTGAAGATGACTCATTGCTGATATCTGGTTCCGAAGATGGATATGTAAGAGTTTGGTCTCTTTTCAGATTATTCGAAGAATTGAGTAACTGGGAAGCAAAAAATCTGTACGAGTATAGTTTTTCAGAGCACACCATGCGCGTAACTGATGTTGTGATTGGTTATGGTGCATCCAATGCAATTATAGTTTCAGCATCAGACGATCGTACGTGTAAGGTATGGAGTTTATCTAGTGGAAGACTACTAAGAAGCATAGTTTTCCCTTCAATAATTAATTCCATTGCATTGGATCCTGCTGAACATGTGTTTTATGCTGGGAGCAGTGATGGAAATATATATATAGCTGCACTTAACACTGATAGAATCACTACTACTAATAACTATGGGAAGCATATTATTGGTTCATTCTCTAATCACAGTAAGACAGTTACTTGCTTAACATATGGCAAAGTTGGAGATTTGTTGATTTCTGGGTCTGAGGATGGAATAGTCCGTGCTTGGAACGCTAAAACTCGCAACATTGTCCGCATGTTTAAACATGCTAAAGGTCCTATAACTAATGTTCTTGTTGTTAGACAAGAAATTGACCCAAGTAATCATATGTCTTCTAATTTACAAGCATCCACAAAAAAGAAGCCTTTAGAAAAGTATGCAAATTCAACAGATGAAGATTCTGATGTGAAGACTGTTATCAGCCTAGGGAGTAGCAGGGAATGCATGGATGTTTCATACCACAGTTCTAATGTGATATCTATTCACACTAAAGAACTTCAGCAACAAGGTTCAGCCGCTGCTTCTGATATCGAGATAGAAAAACTAAAACATGAGCACGAAAGGACAATGAAGATGGCTAACCAATGGAAGAAAATGTATGAAAACTTACATCAATTCGGTATAAAGGAACTATTAGATGGTGATCAAATAAGAACCTTATGA 1320 0.3924 MEVVLASSSVDDGIGCWDIHTGAEQPRYKSCSSPFHGLVSLGSRFLASSQLQHSSSTSGSVFFWSFSKPQVEVKSFPVEPIKPLAGNHQGTYLAGGALSGDIYLWEVETGRLLKKWHAHLRAITCLVFSEDDSLLISGSEDGYVRVWSLFRLFEELSNWEAKNLYEYSFSEHTMRVTDVVIGYGASNAIIVSASDDRTCKVWSLSSGRLLRSIVFPSIINSIALDPAEHVFYAGSSDGNIYIAALNTDRITTTNNYGKHIIGSFSNHSKTVTCLTYGKVGDLLISGSEDGIVRAWNAKTRNIVRMFKHAKGPITNVLVVRQEIDPSNHMSSNLQASTKKKPLEKYANSTDEDSDVKTVISLGSSRECMDVSYHSSNVISIHTKELQQQGSAAASDIEIEKLKHEHERTMKMANQWKKMYENLHQFGIKELLDGDQIRTL* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2869 439 Gene3D - 214 395 IPR015943 GO:0005515
Tpr1g2869 439 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 264 299 - -
Tpr1g2869 439 Pfam Neurobeachin beta propeller domain 104 322 IPR046851 -
Tpr1g2869 439 ProSiteProfiles Trp-Asp (WD) repeats profile. 116 149 IPR001680 GO:0005515
Tpr1g2869 439 ProSiteProfiles Trp-Asp (WD) repeats profile. 264 305 IPR001680 GO:0005515
Tpr1g2869 439 PRINTS G protein beta WD-40 repeat signature 135 149 IPR020472 -
Tpr1g2869 439 PRINTS G protein beta WD-40 repeat signature 190 204 IPR020472 -
Tpr1g2869 439 PRINTS G protein beta WD-40 repeat signature 283 297 IPR020472 -
Tpr1g2869 439 Coils Coil 398 418 - -
Tpr1g2869 439 SMART WD40_4 257 296 IPR001680 GO:0005515
Tpr1g2869 439 SMART WD40_4 109 148 IPR001680 GO:0005515
Tpr1g2869 439 SMART WD40_4 162 203 IPR001680 GO:0005515
Tpr1g2869 439 SMART WD40_4 206 244 IPR001680 GO:0005515
Tpr1g2869 439 SMART WD40_4 69 106 IPR001680 GO:0005515
Tpr1g2869 439 MobiDBLite consensus disorder prediction 328 342 - -
Tpr1g2869 439 PANTHER WD REPEAT-CONTAINING PROTEIN 18 1 429 - -
Tpr1g2869 439 ProSitePatterns Trp-Asp (WD) repeats signature. 283 297 IPR019775 -
Tpr1g2869 439 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 116 149 - -
Tpr1g2869 439 SUPERFAMILY WD40 repeat-like 4 318 IPR036322 GO:0005515
Tpr1g2869 439 MobiDBLite consensus disorder prediction 328 349 - -
Tpr1g2869 439 Gene3D - 1 213 IPR015943 GO:0005515
Tpr1g2869 439 ProSiteProfiles Trp-Asp (WD) repeats profile. 169 212 IPR001680 GO:0005515
Tpr1g2869 439 PANTHER WD-REPEAT PROTEIN 18 1 429 IPR045227 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2869 Tpr-Chr1 33061657 33066524 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2869 113 316 Miscellaneous Gene Families AT5G08390 24.272 2.56e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2869 K14829 - gmx:100791195 650.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g2869 1 33061657 33066524 Tpr1g2869 1 33061657 33066524 ECH