Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2409 ATGAAATCCAAGACACAATCTCAACTACCACTAATAGACTTAACTGATGAAAATCTAAAGCTTGGTAGTAATAATTGGCTTTCAACTTGTCAAGTTATGCGTAGTGCATTTGAGGATCATGGTGGTTTCATGGCACTATATGATAAAGTTGATTCAAAGACAAATAATTCTATGTACTCTGCAATTCAACAATTTTTTGATCTCTCTATAGAAACAAAACAAAGGAAGACCACTGAAAAACCTATCTTTAGCTACTCTGGTCAACATCCTCAGATTCCTTTATTTGAATCTTTGGGTATTTGGAACCCACTCAGTATAGATGATTGTCAAAAATATACAAATATTATGTGGCCACAAGGAAATGATCATTTCTGTGGGAGTGTTAATTCCTATGCAATGGAGCTAGTGGAATTGGATCATATTGTGAAGAGAATGATATTTGATAGCTATGGATTAGAGAGTAAGAAAGTTGAGACATTACTTGAATCAACAGATTATGTGGTTAGAGGATTCAAATACAGAACACCTCAAGTGGGTGAGAGTAACTTGGGAGTGGCTCCACATGCTGATGCATCTTTCATAACAATATTGAATCAGAAGGTAGAAGGATTAGAAGTCAAATTGAAGAATGGGGATTGGTGTGAGGTTGGTGCCTCTCCTTCTTTGTTTTTGGTCATGGCTGGTGATGCATTGACGGTTTGGAGTAATGATAGAATACCAGCTTGTGCACATAGAGTCTTCATTAATTCAAAGATTGAAAGGTATTCCACGGGAATACTTTCATATGCTGCTAAGATAATTGAACCACAAGAGGAGTTAGTTGATGAAGAGGAACACCCTTTACGTTATAAACCATTTGATCATTATGGTTACTTACGTTTCTTTCTCACAGAAGAAGCCTTAAAATGTGATTCTCGAATCAAGACATATTGTGGTATTTGA 942 0.3599 MKSKTQSQLPLIDLTDENLKLGSNNWLSTCQVMRSAFEDHGGFMALYDKVDSKTNNSMYSAIQQFFDLSIETKQRKTTEKPIFSYSGQHPQIPLFESLGIWNPLSIDDCQKYTNIMWPQGNDHFCGSVNSYAMELVELDHIVKRMIFDSYGLESKKVETLLESTDYVVRGFKYRTPQVGESNLGVAPHADASFITILNQKVEGLEVKLKNGDWCEVGASPSLFLVMAGDALTVWSNDRIPACAHRVFINSKIERYSTGILSYAAKIIEPQEELVDEEEHPLRYKPFDHYGYLRFFLTEEALKCDSRIKTYCGI* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2409 313 Pfam 2OG-Fe(II) oxygenase superfamily 181 256 IPR044861 -
Tpr1g2409 313 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 4 312 - -
Tpr1g2409 313 SUPERFAMILY Clavaminate synthase-like 6 298 - -
Tpr1g2409 313 Pfam non-haem dioxygenase in morphine synthesis N-terminal 9 87 IPR026992 -
Tpr1g2409 313 PANTHER 2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 4 312 - -
Tpr1g2409 313 Gene3D - 7 310 IPR027443 -
Tpr1g2409 313 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 163 269 IPR005123 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2409 Tpr-Chr1 27165280 27167439 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2409 131 280 Glycosyltransferase AT5G59530 26.752 1.09e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2409 - - gmx:100789342 502.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g2409 1 27165280 27167439 Tpr6g1432 6 15448097 15451668 PCT