Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2369 ATGGGTGTAGTTAGTAATAATTCAGACTCAGATGGATCTGTTCAGAATTGTATCAATGGTTTAGAGGAGAAACTTGACGAACTTCGCGGCCTTCTTGGTAAGACTAATGGTGATCCATTAAGAATAGTGAGTGTTGGAGCTGGTGCTTGGGGGAGTGTTTTTACAGCATTGTTACAAGACACTTATGGACAATTTCGCGACAAGGTGCAAATTAGGATATGGAGAAGGCAGTTAAAGGTAGTTGATAAAGCCACTGCTAAGCATTTGTTTGAAGTTATAAACTCTAGGGAAGATGTGTTGAGGAGGTTGATTCGGCGTTGCGCTTATTTGAAATATGTTGAAGCAAGGCTTGGTGATAGAACATTATTTGCTGATGAGATTCTGAAAGATGGGTTTTGTTTGAATATGATTGATACGCCGATTTGTCCTTTGAAGGTTGTTACAAACTTGCAGGAAGCTGTTTGGGATGCTGATATTGTTGTTAATGGATTGCCTTCGACAGAAACACGTGAGATTTTTGAAGAGATTAGTAAATATTGGAAGGAGAGAATCACAGTGCCTGTAATAATTTCTTTGGCAAAGGGTATAGAGGCTGCATTGGAGCCTGTTCCTCATATTATAACTCCCACAAAAATGATTCACCAAGCAACTGGAGTTTCGATGGAGAACATACTTTATCTTGGCGGTCCCAATATTGCATCAGAAATCTACCACAAGGAGTATGCCAATGCTAGAATATGTGGTGCTGAGAAATGGAGGAAGCCTCTTGCAAAGTTTCTGAGACAACCACATTTTATTGTTTGGGACAACAGTGACCTTGTCACCCATGAGGTCATGGGTGGCTTAAAAAATGTTTATGCGATCGGTGCCGGAATGGTAGCAGCCCTTACCAATGAGAGTGCCACCAGCAAATCTGTATATTTTGCACACTGTACATCAGAGATGATATTTATCACTCACCTGTTGTCTGAAGAACCTGAAAAACTCGCGGGACCATTATTGGCTGATACTTACGTGACTCTATTGAAAGGTCGTAATGCTTGGTACGGCCAGATGCTAGCTAAGGGGGAATTAAGTCCTGACATGGGTGATAGCATAACAGGCAAAGGAATGATTCAGGGTGTCTCTGCAGTAGAGGCTTTCTTTGAACTTTTGAGCCAATCAAGCCTGAATGTGTTGCACCCTGAAGAGAACAAGCCTGTTGCTCCTGTTGAGCTCTGCCCAATCTTGAAGACACTGTATACAATATTAATATCCAGGGAACAATCAACAAAAGCTATTCTTCAAGCTCTGAGGGATGAAAATCTGAACGATCCGCGTGAACGTATTGAGATTGCACAAAGCCATGCATTCTACAGACCTTCACTTCTTGGACAGCCTTGA 1383 0.4179 MGVVSNNSDSDGSVQNCINGLEEKLDELRGLLGKTNGDPLRIVSVGAGAWGSVFTALLQDTYGQFRDKVQIRIWRRQLKVVDKATAKHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLFADEILKDGFCLNMIDTPICPLKVVTNLQEAVWDADIVVNGLPSTETREIFEEISKYWKERITVPVIISLAKGIEAALEPVPHIITPTKMIHQATGVSMENILYLGGPNIASEIYHKEYANARICGAEKWRKPLAKFLRQPHFIVWDNSDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMIFITHLLSEEPEKLAGPLLADTYVTLLKGRNAWYGQMLAKGELSPDMGDSITGKGMIQGVSAVEAFFELLSQSSLNVLHPEENKPVAPVELCPILKTLYTILISREQSTKAILQALRDENLNDPRERIEIAQSHAFYRPSLLGQP* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2369 460 Pfam NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 144 246 IPR011128 GO:0016616|GO:0046168|GO:0051287
Tpr1g2369 460 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 272 427 IPR008927 -
Tpr1g2369 460 Gene3D - 135 268 - -
Tpr1g2369 460 Gene3D - 23 103 - -
Tpr1g2369 460 PANTHER GLYCEROL-3-PHOSPHATE DEHYDROGENASE [NAD(+)] 10 460 - -
Tpr1g2369 460 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 40 272 IPR036291 -
Tpr1g2369 460 PRINTS NAD-dependent glycerol-3-phosphate dehydrogenase signature 44 61 IPR006168 GO:0004367|GO:0006072|GO:0009331
Tpr1g2369 460 PRINTS NAD-dependent glycerol-3-phosphate dehydrogenase signature 265 289 IPR006168 GO:0004367|GO:0006072|GO:0009331
Tpr1g2369 460 Pfam NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus 272 426 IPR006109 GO:0004367|GO:0005975
Tpr1g2369 460 PANTHER GLYCEROL-3-PHOSPHATE DEHYDROGENASE 10 460 - -
Tpr1g2369 460 Coils Coil 18 38 - -
Tpr1g2369 460 Gene3D - 272 432 IPR013328 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2369 Tpr-Chr1 26558434 26562123 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2369 10 460 Acyl Lipid Metabolism Gene Families AT2G41540 87.140 0.0 806
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2369 K00006 - gmx:100797552 847.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g1466 6 15804128 15807359 Tpr1g2369 1 26558434 26562123 PCT