Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2334 ATGGGAGTGCACTTATTTTTGGTAATGGTGTGTTTCATGGTGGCTTTTGCTATTGTTAAAAATGGGTACACCCATAAAGCTCATGTTGATGGAAGTTTTGTTCAAAGAAATGGTACTCAATTTATTTTGAATGGGAAGCCACATTATGTGAATGGATTCAATGCTTATTGGTTAATGACCATGGCAGCTGATACTCCAAATACAAGGTCCAAGGTATGTACCACTTTGGTACAAGCTTCACAACTTGGTTTAAATGTAGCAAGAACATGGGCTTTCAATGATGGAGGTGATTATAAAGCCCTTCAGGTTTCTCCTGCTTCTTATGAAGAAAATGTCTTTCAGGGATTGGATTTCTTGATATCAGAGGCAGGGAAACATGGAGTGCAGCTTATTCTAAGCTTGGTGAATAATTGGAAAACTTTTGGAGGTAAAAGTAAATATGTTGAGTGGGCAAGACAACGTGGTGAAAATATCATAAGTGAAGATGACTTTTTCACTCACCCTGTTGTTAAGCAGTACTACAAAAACCATGTTAAGACTATGTTGACAAGAAAGAACACCATAAATGGGTTGTTATACAAAGATGATCCAACTATTTTTGCTTGGGAACTTATTAATCAACCTCGTTATGAAAATGACACTTCCGGAAAATCAATTCAGAATTGGGTTAGTGAGATGGCAGCTTATGTGAAATCCATTGATAGCAACCATTTGCTCGAAATAGGACTTGAAGGTTTCTACGGTGAAACAACGTCTCAAAAGCTGTTCAATCCCAATTCTACTCAAGTTGGTACTGATTTTATCTCCAACAATCAAATTCCTGAAATTGATTTTGCCACCATTCATATATACCCTGATCAATGGTTACCAGGCTCGGACGAGACAACTGAAAATGCATTTGTTGAGAAATGGATAGAAGGTCATATTGAGGACTCAAATAATGTTTTAGGAAAACCCCTTATTATAGCAGAGTTTGCAAAATCTTCAAAATCGCCTGGATATAGCATTTATAAAAGAGACAATTACTTTAAGAAAATATATGAAGCCATATCTACAAGTGCTACTGGTGGAGGCTCATGTGCAGGTGGGATTTTCTGGCAACTCATGCCTCAAGGATTGGATAGGTATGGAGATGGCTATGAAGTCATTTTTGAGAATAGTCCTTCAACTATTGAAATCATCAAACAACAATCTATAAAGATGTCCAGTATCAAATCCTAG 1221 0.3694 MGVHLFLVMVCFMVAFAIVKNGYTHKAHVDGSFVQRNGTQFILNGKPHYVNGFNAYWLMTMAADTPNTRSKVCTTLVQASQLGLNVARTWAFNDGGDYKALQVSPASYEENVFQGLDFLISEAGKHGVQLILSLVNNWKTFGGKSKYVEWARQRGENIISEDDFFTHPVVKQYYKNHVKTMLTRKNTINGLLYKDDPTIFAWELINQPRYENDTSGKSIQNWVSEMAAYVKSIDSNHLLEIGLEGFYGETTSQKLFNPNSTQVGTDFISNNQIPEIDFATIHIYPDQWLPGSDETTENAFVEKWIEGHIEDSNNVLGKPLIIAEFAKSSKSPGYSIYKRDNYFKKIYEAISTSATGGGSCAGGIFWQLMPQGLDRYGDGYEVIFENSPSTIEIIKQQSIKMSSIKS* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2334 406 SUPERFAMILY (Trans)glycosidases 33 380 IPR017853 -
Tpr1g2334 406 PANTHER - 11 404 IPR045053 GO:0004553
Tpr1g2334 406 PANTHER MANNAN ENDO-1,4-BETA-MANNOSIDASE 1 11 404 - -
Tpr1g2334 406 Pfam Cellulase (glycosyl hydrolase family 5) 46 341 IPR001547 GO:0004553|GO:0071704
Tpr1g2334 406 Gene3D Glycosidases 30 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2334 Tpr-Chr1 26159744 26162396 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2334 29 405 Glycoside Hydrolase AT1G02310 56.919 1.46e-158 452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2334 K19355 - gmx:100791612 528.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g2334 1 26159744 26162396 Tpr1g2334 1 26159744 26162396 ECH