Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2333 ATGGGGTTCCAAATTTTAGTATTAACATATTTTCTAATGTCTTTGGTTATTGTTCAACATGGGATTTGCCAAAGAATTAACGTTGGTACCGATTTTGTTCAAAGAAATGGCACCCATTTTATTTTGAATGGAAAACCACATTATGTGAACGGGTTCAATTCCTATTGGTTAATGATCTTTGCATCTGATCCATCTACAAGATTTAAGGTTACTTCCACTTTTCAACAAGCTTCTCAACATGGTTTAAACCTAGGAAGAACATGGGCATACAACGATGGAGATTATAAAGCCCTTCAAATCTCTCCTGGTTTTTACGACGAAAATGTCTTTAGGGCATTGGATTTTGTGATATCAGAAGCAAGAAAATATGGAGTGCAACTTATACTTGGGTTGGTAAATAATTGGGCAGATTTAGGAGGTAAACAGAAATATGTGGAGTGGGCAAGAGAACGCGGTCAAACTGTCAAAAGTGAATATGACTTCTTTACACACCCCGTTATTAAGCAATACTACAAAAATCATGTTAAGGTTGTGTTGACAAGAAAGAACACCATAAATGGAATGTTATACAAGGATGATCCAACTATTTTCGCCTGGGAACTTATCAATGAACCTCATTATGAAAATGACACCTCCGGAAAATCAATTCAGAATTGGGTTAGTGAGATGGCAGCCTATGTGAAATCCATCGATAAGAATCATTTACTGGAAATAGGTCTTGAAGGATACTATGGTGAAACAATGCCACAAAAAAAGCAGTTCAATCCCAATCCCAATTATATTCCATCCGGAACTGATTTTATCTCCAACAACCAAATTCCTCAAATTGATTTTGCCACCATCCATTTATACCCTGATGAGTGGTTACCAAACTCAAACAAGACAGTCATAAATGCATTTGTTGATAAATGGATAGAATCACATATTGAAGACTCAAATACTATTCTAGGAAAGCCCATTATTATAGCTGAGTTTGGAAAATCTTCAAACTCATCTAGACATAGCATAGCTAAAAGGAATAGTTACTTTAGGAAAATATACAAAGCCATATCTACAAGTGCTTTTAGTGGAGGCTCATGTGCTGGTGGAATTTTCTGGCAACTTCTGTCTCAAGGAATGGATAATTATGGAGATGGCTTTCAAGTTATTTTTGAGAATCATCCTTCAACTGCCAAGGTCATTAAACATCAATCTAAGAAAATGTCAAAAATCAAAATAGTATAA 1224 0.3538 MGFQILVLTYFLMSLVIVQHGICQRINVGTDFVQRNGTHFILNGKPHYVNGFNSYWLMIFASDPSTRFKVTSTFQQASQHGLNLGRTWAYNDGDYKALQISPGFYDENVFRALDFVISEARKYGVQLILGLVNNWADLGGKQKYVEWARERGQTVKSEYDFFTHPVIKQYYKNHVKVVLTRKNTINGMLYKDDPTIFAWELINEPHYENDTSGKSIQNWVSEMAAYVKSIDKNHLLEIGLEGYYGETMPQKKQFNPNPNYIPSGTDFISNNQIPQIDFATIHLYPDEWLPNSNKTVINAFVDKWIESHIEDSNTILGKPIIIAEFGKSSNSSRHSIAKRNSYFRKIYKAISTSAFSGGSCAGGIFWQLLSQGMDNYGDGFQVIFENHPSTAKVIKHQSKKMSKIKIV* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2333 407 Pfam Cellulase (glycosyl hydrolase family 5) 44 341 IPR001547 GO:0004553|GO:0071704
Tpr1g2333 407 Gene3D Glycosidases 29 405 - -
Tpr1g2333 407 SUPERFAMILY (Trans)glycosidases 29 396 IPR017853 -
Tpr1g2333 407 PANTHER MANNAN ENDO-1,4-BETA-MANNOSIDASE 1 10 405 - -
Tpr1g2333 407 PANTHER - 10 405 IPR045053 GO:0004553
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2333 Tpr-Chr1 26154841 26158444 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2333 22 405 Glycoside Hydrolase AT1G02310 52.956 1.97e-150 431
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2333 K19355 - gmx:100791612 556.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g2333 1 26154841 26158444 Tpr1g2333 1 26154841 26158444 ECH