Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1724 ATGTTCAACTTCTTCAAAACATTATTATGCATTCTATGTTTCCTCTTTCTATCCTTTCATGTTTCTCTGTGTTTCTCTTCTTCTTCACTTGGGAACTTTACTTTTTGCTTGGATAATCACAAAATAAAAAACTTCACTGCTTTCCCTTACAATGAACATGATCAACCTTCTGCTTATAATTACTACAAACTTCTTAACTTTTCAATTCAAAACCTTCGGTTCGCAGAACCTAATATTCCTAAGCCGATCGCAATTGTACTTCCAGAGAGTTTGGACCAGTTACAGAAAACTGTAACATGCTGTAGACAAAATTCTTTGGGAATAAGAGTGAGAAGTGGTGGACATAGCTATGAAGGAACTTCCTCTGTTGCTGGTAATGGTACTCTTTTCGTCATCATTGACATGATGAATTTAAACAATGTCAGTGTTGATATTAAGACAGAAACAGCATGGGTTGAAGGCGGTGCGACATTGGGAGAAACGTACTATGCTATCTCTCAAGCAAGTGATGCATATGGATTCTCAGCCGGGTCATGTCCAACCGTAGGAGTCGGCGGACATATCAGTGGTGGTGGATTTGGTTTGTTGTCTAGAAAATACGGACTTGCAGCCGATAATGTGGTTGATGCCCGTCTTATTGATGCGAATGGGCGATTATTAGACCGCAAAACTATGGGAGAAGATGTGTTTTGGGCTATTAGAGGAGGAGGTGGTGGTCTTTGGGGAATTGTATATGCATGGAAAATTCAATTGTTGAAAGTGCCACAAACTGTAACTAGTTTCATTGTATCTAGAACAGGCACAAAAAGTCATATTGCTATGCTAGTGAATAAATGGCAAAATGTGGCACCAAACTTGGATGATGAATTCTACTTATCATGTTTTGTTGGTGCTGGTTTACCTGAAGCTAAAATAATAGGCTTATCAACAACATTTAAAGGGCTTTATCTTGGTCCTAAAGCAAAAGCCATATCTATGTTGAAAAAGGCTTTTCCTGAATTAGGTGTTGCAGAAGAAGAATGTAGAGAAATGAGTTGGATAGAGTCAGTTGTTTTCTTCTCTGGATTAACTGTTGGAGCTTCTGTTTCTGAGTTGGGGAATAGATATATGCAAGATAAAGAATATTTCAAGGCAAAATCAGATTTTGTAAGGAGCTATGTTCCTCTTAAAGGTATAGAAACTGCATTGGATTTTCTAGAAAAGGAGCCTAAAGGGTCTGTTATTTTGGATCCTTATGGTGGGATTATGCATAATATAAGCAGTGATTCTATTGCTTTTCCACACAGAAAAGGAAACATTTTTTCAATTCAATACTTGATTTATTGGAAAGAAGTGGACAATGAAAAAAGTAGTGATTATATTAATTGGATAAGAGGATTCTATTCTTCTATGACTCCTTTTGTTTCATTTGGTCCAAGGGCTGCATATATTAATTACATGGATTTTGATCTTGGAGTAATGAAGATGATTAGTACTAATGATGTGGTTAAAGCAAGGGTTTGGGGTGAAAAGTACTTCTTGAATAACTATGATAGACTTGTGAGGGCAAAGACTTTGATTGATCCTAATAATGTGTTCACTAATGAACAAGGGATTCTTCCTATGCCTTTTAATAGTTCCAATGCCAAAGCACTTACTTCATAA 1644 0.3668 MFNFFKTLLCILCFLFLSFHVSLCFSSSSLGNFTFCLDNHKIKNFTAFPYNEHDQPSAYNYYKLLNFSIQNLRFAEPNIPKPIAIVLPESLDQLQKTVTCCRQNSLGIRVRSGGHSYEGTSSVAGNGTLFVIIDMMNLNNVSVDIKTETAWVEGGATLGETYYAISQASDAYGFSAGSCPTVGVGGHISGGGFGLLSRKYGLAADNVVDARLIDANGRLLDRKTMGEDVFWAIRGGGGGLWGIVYAWKIQLLKVPQTVTSFIVSRTGTKSHIAMLVNKWQNVAPNLDDEFYLSCFVGAGLPEAKIIGLSTTFKGLYLGPKAKAISMLKKAFPELGVAEEECREMSWIESVVFFSGLTVGASVSELGNRYMQDKEYFKAKSDFVRSYVPLKGIETALDFLEKEPKGSVILDPYGGIMHNISSDSIAFPHRKGNIFSIQYLIYWKEVDNEKSSDYINWIRGFYSSMTPFVSFGPRAAYINYMDFDLGVMKMISTNDVVKARVWGEKYFLNNYDRLVRAKTLIDPNNVFTNEQGILPMPFNSSNAKALTS* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1724 547 Gene3D - 142 534 IPR016169 -
Tpr1g1724 547 ProSiteProfiles PCMH-type FAD-binding domain profile. 78 254 IPR016166 GO:0071949
Tpr1g1724 547 SUPERFAMILY FAD-binding/transporter-associated domain-like 66 255 IPR036318 GO:0050660
Tpr1g1724 547 Gene3D - 32 138 IPR016167 -
Tpr1g1724 547 PANTHER OS08G0158400 PROTEIN 20 539 - -
Tpr1g1724 547 Pfam Berberine and berberine like 475 532 IPR012951 GO:0016491|GO:0050660
Tpr1g1724 547 Pfam FAD binding domain 82 220 IPR006094 GO:0050660
Tpr1g1724 547 Gene3D - 257 471 - -
Tpr1g1724 547 PANTHER FAD-BINDING BERBERINE FAMILY PROTEIN 20 539 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1724 Tpr-Chr1 16516103 16517799 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1724 56 537 Miscellaneous Gene Families AT4G20820 44.330 9.44e-131 390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1724 - - gmx:100790761 827.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g1724 1 16516103 16517799 Tpr1g1724 1 16516103 16517799 ECH