Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1716 ATGCAGCGTTTCTGGAGATTCACTTCAGAAGCAGCACAATCTTCCACATTCATCATCAAACGACGGATCAATACCCTACAAAAGCCGCCAAGCGCAGTCTCAGATCTTTTTTCATTGTTCAAAGCTTCTATTCCTTCTTCGCACAAAAACCATCTCACCGTCGATGAAGTCGCGGTTTTGAGGAACAAATTGCTTCTTGTAGCTTCTGATTCTGTTAGTGTTACAACCATTTTGAATGATAATGTTGATTCTTTACTCTCTTCTCGCTCTCTCTTTCTTGCACTTCTCAATCACTTCAATTCACACCCTTCCCTTTTACTACAGGTGTTTAATTGGAGAAGGAAGAGAAAGGTTTCTGAATCTGATACTTGCAAGAATTCCATGGATGCACATGAGTATTCCAAGGGTATTAAAGCGGCAGGAAGATGTAAAAATATTGATCTTGCAATTGAGCTATTTAAGGAGGCTGAAAATAAGGGTGTGAAGATAAGCAGCACTTACAATGCACTAATGGGTGCTTTTATGTTCAATGGTCTTGCTGATAGATGTTACTCTTTGTTTCTCGACATGAAAAAGGATCCAACTTGCACTCCCAACAATGTTACGTATAATATTGTTTTATCTGTTTTTGGTCGCGTGATGCTCATTGATCACATGGAAGCAACATTCAAGGAGATGAGGGAGTTACACCTCTCACCTAATATATCCACTTATAATTATTTGATTGGTGGATATATCTCAAGTTGGATGTGGGATGATATGGAAAAAGTTTTTCAAGTGTTGAAGTCAGGCCCTGTTGAGCCTAATATGAAAACCTACCTCTTAGTGATTCGTGGGTATGCACACTGTGGTAATCTGAAGAAGATGGAAGAGATATATTCGTTGGTAAGGGATCATGTAAATGAAAATGAAATGTCGATTATCAGGGTTATGATATGTGCCTATTGTAAAAGTTCTGATGCAGATAAAGTTAAGAAAGTAGAGGCGTTGTTAAAGTTGATCCCTGAAAAAGAATACAGGCCTTGGTTAAATGCGGTGTTGATTAAGTTTTATGCCCAGGAAAACAGGTTAAAGGAAATGGAGAATGCAATAAATGATGCATTTGAGCACAAAACTGCTATAACAACCTCGGGTATTATGAAGTGTATAATTGCAGCTTATTTTCGGTGCAACGCAATAGAAAATCTTGAGAATTTTATTAGACTATCTGTATTCGCGGAGTGGAGAATCTGCCACTCCTTATTTCATTGTAAGCTGGTCATGTATGGTTCACAAAAGAACTTTAGAGAAATGCAAAATGTCCTTGAGGAGATGGGAGATATTGACATGAATTGCAATAAGAGAACACTGTGGATAATGTACAAAGCCTACTCGAGTACTGGTCAGAGATCCATGGTTTTGAAAATATTGGGAAAAATGTTCAAGCATGGTTACGAAATTCCCGATGATGCATTTCCATCATGA 1464 0.3811 MQRFWRFTSEAAQSSTFIIKRRINTLQKPPSAVSDLFSLFKASIPSSHKNHLTVDEVAVLRNKLLLVASDSVSVTTILNDNVDSLLSSRSLFLALLNHFNSHPSLLLQVFNWRRKRKVSESDTCKNSMDAHEYSKGIKAAGRCKNIDLAIELFKEAENKGVKISSTYNALMGAFMFNGLADRCYSLFLDMKKDPTCTPNNVTYNIVLSVFGRVMLIDHMEATFKEMRELHLSPNISTYNYLIGGYISSWMWDDMEKVFQVLKSGPVEPNMKTYLLVIRGYAHCGNLKKMEEIYSLVRDHVNENEMSIIRVMICAYCKSSDADKVKKVEALLKLIPEKEYRPWLNAVLIKFYAQENRLKEMENAINDAFEHKTAITTSGIMKCIIAAYFRCNAIENLENFIRLSVFAEWRICHSLFHCKLVMYGSQKNFREMQNVLEEMGDIDMNCNKRTLWIMYKAYSSTGQRSMVLKILGKMFKHGYEIPDDAFPS* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1716 487 Gene3D Tetratricopeptide repeat domain 345 485 IPR011990 GO:0005515
Tpr1g1716 487 Gene3D Tetratricopeptide repeat domain 54 229 IPR011990 GO:0005515
Tpr1g1716 487 Gene3D Tetratricopeptide repeat domain 230 299 IPR011990 GO:0005515
Tpr1g1716 487 TIGRFAM PPR: pentatricopeptide repeat domain 201 234 IPR002885 -
Tpr1g1716 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 234 268 IPR002885 -
Tpr1g1716 487 Pfam PPR repeat family 233 281 IPR002885 -
Tpr1g1716 487 Pfam PPR repeat family 165 210 IPR002885 -
Tpr1g1716 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 199 233 IPR002885 -
Tpr1g1716 487 PANTHER EXPRESSED PROTEIN 22 486 IPR044179 GO:0003729
Tpr1g1716 487 PANTHER OS05G0407900 PROTEIN 22 486 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1716 Tpr-Chr1 16473746 16480652 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1716 141 364 Miscellaneous Gene Families AT4G11690 29.741 2.21e-16 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1716 - - mtr:MTR_5g076010 657.136