Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1341 ATGCTTCAGATTTTCTCTATGGGGAACAAGTATCTGTTGGTGGCTTGCTGTTTGTGGGCTTTGACATGCTCGCTTCTTCCTTCTTTCTCCTATGGACTTATGCGGATTGATTTGAAGAAGAGAACTCTAGATCTTGAAAGTATTAAAGCTGCTAGAATGGTGAGAGAGAGGCTAAAGTCAAGCAGACCCGTGTTGGGCGCAAATGACCAGTATACCGCTAAATCATCTGATGATGCCATAGTGCCTTTGAAGAATTATTTGGATGCACAATATTATGGAGAGATTGGAATTGGCACACCTCCACAGACCTTTAATGTCATATTTGATACTGGTAGTTCCAACCTTTGGGTTCCATCGTCGAAATGCTATTTTTCTCTTGCCTGCTACACCCATCATTGGTACAAGGCAAAGAAATCCAAAACATATACCAAAAATGGAACATCATGTAAAATAGCATATGGATCTGGAACAATATCTGGTTTTTTCAGTCAAGATGATGTTAAACTTGGTGATGTTGTTGTCAAGGATGTGGATTTCATTGAAGCTACCCGTGAAGGAAGTATTTCCTTTGTGCTGGCAAAGTTTGATGGACTACTTGGACTTGGGTTTCAGGAGATCTCTGTTGAAAATGCTGTGCCAGTATGGTACGAAATGGTGCAGCAAGATCTAGTAAATGAGCAGGTGTTCTCTTTTTGGCTTAATGGGGATCCAAAAGCGAAAAAGGGTGGTGAGCTAGTTCTTGGGGGTGTTGATCCGGATCACTTCAAAGGAAAACATATATATGTTCCAGTCACTCAAAAAGGTTATTGGCAGTTCAATATGGGAGATTTTTTCATCGGAGGTCTTTCAACAGGTGTTTGCGAAAGTGGCTGTGCTGCTATTGTGGATTCAGGAACATCATTGCTTGCTGGTCCAACTACTGTTGTGACCGAAATCAACCATGCTATTGGAGCTGAAGGAGTTCTGAGTGTAGAATGTAAGGAAATTGTTACTGAATATGGAGAGTTGATATGGGATCTCTTGGTAGCCGGGGTAAGACCTGGTGATGTATGTTCACAAGTTGGTTTATGTGTTTCCAAGAGGGATCAATCTAAGAGCATGGGGATTGAGATGGTTACCGAAAAGGAACAGGGAGAGTTATCTGCTAAAGATACTGCTTTGTGCTCTTCCTGTCAGATGCTTGTGATTTGGATCCAGAATCAACTTAAACGAAAGTCAACTAAGGATAGAATATTCAACTACGTAAATCAACTATGCGAGAGCTTGCCAAGTCCTAATGGGGAGTCCATAGTAGACTGTAATAGCATTTATCAACTGCCAAATATTTCGTTTACTATCGGAGATAAATCTTTCGTCCTCAGTCCAGAGCAGTATATTTTGAAAACCGGAGAAGGCATTGCACAAGTCTGCCTCAGTGGGTTTATTGCTTTCGACATTCCTCCTCCACGGGGTCCTCTCTGGATTCTTGGTGATATTTTCATGAGGGTATATCACACTGTCTTCGACTATGGAAATCTGCAACTTGGTTTTGCTGAAGCTGCTTAG 1545 0.4162 MLQIFSMGNKYLLVACCLWALTCSLLPSFSYGLMRIDLKKRTLDLESIKAARMVRERLKSSRPVLGANDQYTAKSSDDAIVPLKNYLDAQYYGEIGIGTPPQTFNVIFDTGSSNLWVPSSKCYFSLACYTHHWYKAKKSKTYTKNGTSCKIAYGSGTISGFFSQDDVKLGDVVVKDVDFIEATREGSISFVLAKFDGLLGLGFQEISVENAVPVWYEMVQQDLVNEQVFSFWLNGDPKAKKGGELVLGGVDPDHFKGKHIYVPVTQKGYWQFNMGDFFIGGLSTGVCESGCAAIVDSGTSLLAGPTTVVTEINHAIGAEGVLSVECKEIVTEYGELIWDLLVAGVRPGDVCSQVGLCVSKRDQSKSMGIEMVTEKEQGELSAKDTALCSSCQMLVIWIQNQLKRKSTKDRIFNYVNQLCESLPSPNGESIVDCNSIYQLPNISFTIGDKSFVLSPEQYILKTGEGIAQVCLSGFIAFDIPPPRGPLWILGDIFMRVYHTVFDYGNLQLGFAEAA* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1341 514 Gene3D Acid Proteases 250 514 IPR021109 -
Tpr1g1341 514 ProSiteProfiles Saposin B type domain profile. 321 361 IPR008139 -
Tpr1g1341 514 CDD phytepsin 81 512 IPR033869 GO:0004190
Tpr1g1341 514 PANTHER FUNGAL PROTEINASE A, ASPARTIC PROTEINASE SUPERFAMILY PROTEIN 10 514 - -
Tpr1g1341 514 Pfam Saposin-like type B, region 1 387 423 IPR007856 GO:0006629
Tpr1g1341 514 Gene3D Acid Proteases 34 249 IPR021109 -
Tpr1g1341 514 SMART sapb_4 285 357 IPR008139 -
Tpr1g1341 514 PRINTS Pepsin (A1) aspartic protease family signature 97 117 IPR001461 GO:0004190|GO:0006508
Tpr1g1341 514 PRINTS Pepsin (A1) aspartic protease family signature 243 256 IPR001461 GO:0004190|GO:0006508
Tpr1g1341 514 PRINTS Pepsin (A1) aspartic protease family signature 293 304 IPR001461 GO:0004190|GO:0006508
Tpr1g1341 514 PRINTS Pepsin (A1) aspartic protease family signature 487 502 IPR001461 GO:0004190|GO:0006508
Tpr1g1341 514 Pfam Eukaryotic aspartyl protease 90 513 IPR033121 -
Tpr1g1341 514 Pfam Saposin-like type B, region 2 325 357 IPR008138 -
Tpr1g1341 514 ProSiteProfiles Saposin B type domain profile. 384 425 IPR008139 -
Tpr1g1341 514 Gene3D - 321 423 - -
Tpr1g1341 514 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 293 304 IPR001969 GO:0004190|GO:0006508
Tpr1g1341 514 SUPERFAMILY Acid proteases 21 513 IPR021109 -
Tpr1g1341 514 ProSiteProfiles Peptidase family A1 domain profile. 91 511 IPR033121 -
Tpr1g1341 514 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 106 117 IPR001969 GO:0004190|GO:0006508
Tpr1g1341 514 SUPERFAMILY Saposin 322 423 IPR011001 -
Tpr1g1341 514 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 10 514 IPR001461 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1341 Tpr-Chr1 12288225 12293247 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1341 K08245 - gmx:547993 895.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0369 6 2959860 2964524 Tpr1g1341 1 12288225 12293247 PCT