Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1253 ATGGCGAAAAACATGATTCTTCTTCTATTTCTCTTTTGCTTTCAAGTAAACGCCATTTTAGACCCAACAGATTTTCTAGCTCTACAATCCATTCGTAAATCTCTTGAAGACATGCCTGGTTCTGATTTCTTCTCTTCTTGGGATTTCACTTCTGATCCATGCAACTTCTCCGGTGTTTTCTGTGATTCCGATAAGGTTATTTCTCTCAATCTAGGTGATCCTAGAGCCGGTTCAGCCGGTTTAACCGGTCGACTCGACTCAGCTATTGGTAAGCTTTCTTCTCTAACTGAGTTCACTGTTGTTCCGGGAAGAATTTACGGTCCTCTGCCTCAAACCATTTCAAGTTTGAAGAATCTCAGGTTTCTTGGTGTTAACAGAAACTTCATCTCCGGTGAGATTCCGACGGAGTTAGGTGAGTTACGCAGTCTGAGAACTATTGATCTAAGTTATAATCAGCTCACCGGAAAAATTCCTCCGACGGTTGGATCATTACCGGGATTAACCAATCTCATTCTCTGTCATAACCGTTTATCCGGTTCTATTCCCCGGTTTGATTCTCAGAGCTTAAGCCGGTTGGACCTGAAACATAACTCACTCACCGGTTCGATTGGTCCAAATTCTCTTCCTCCGTCGCTTCAGTATCTCTCATTGTCGTGGAATCAACTCACCGGTTCAATGGACCGGGTTTTAACCCGGCTTGAACAGTTAAACTATTTAGACCTTAGTCTAAACCAGTTCACTGGATCCGTCCCGGGTCGGATATTCTCATTTCCACTAACAAATCTCCAGTTACAAAGAAATCAGTTTACCGGTTCAGTTGAACCGGTTGATCAAGTTGCAATACCAACCGTTGATCTTAGTTACAACAGATTATCCGGTCAAATTTCGCCTATGCTAGCTAGCGTGCAGAATCTGTACTTGAATAATAATCGGTTCACGGGTCGGGTACCCGCTAGTTTTGTGGAGCGGTTACTTGATGCGAGTATACAGATATTGTATTTGCAGCATAATTATCTAACTGGAATTGAGATTAGTCCAACGGCTGTGATTCCAGAGAGAAGTTCATTGTGTATGCAGTATAATTGTATGGTCCCTCCTGTAGAGACTCCTTGTCCTTTGAGATCTGGGAAGCAGAAAACAAGGCCTACTACACAGTGCAATCAGTACAAGGGATAA 1176 0.4294 MAKNMILLLFLFCFQVNAILDPTDFLALQSIRKSLEDMPGSDFFSSWDFTSDPCNFSGVFCDSDKVISLNLGDPRAGSAGLTGRLDSAIGKLSSLTEFTVVPGRIYGPLPQTISSLKNLRFLGVNRNFISGEIPTELGELRSLRTIDLSYNQLTGKIPPTVGSLPGLTNLILCHNRLSGSIPRFDSQSLSRLDLKHNSLTGSIGPNSLPPSLQYLSLSWNQLTGSMDRVLTRLEQLNYLDLSLNQFTGSVPGRIFSFPLTNLQLQRNQFTGSVEPVDQVAIPTVDLSYNRLSGQISPMLASVQNLYLNNNRFTGRVPASFVERLLDASIQILYLQHNYLTGIEISPTAVIPERSSLCMQYNCMVPPVETPCPLRSGKQKTRPTTQCNQYKG* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1253 391 Pfam Leucine Rich Repeat 142 164 IPR001611 GO:0005515
Tpr1g1253 391 Pfam Leucine Rich repeat 210 224 IPR001611 GO:0005515
Tpr1g1253 391 SMART LRR_typ_2 233 257 IPR003591 -
Tpr1g1253 391 SMART LRR_typ_2 210 232 IPR003591 -
Tpr1g1253 391 SMART LRR_typ_2 140 164 IPR003591 -
Tpr1g1253 391 SMART LRR_typ_2 299 322 IPR003591 -
Tpr1g1253 391 Pfam Leucine rich repeat N-terminal domain 22 62 IPR013210 -
Tpr1g1253 391 Gene3D Ribonuclease Inhibitor 23 185 IPR032675 -
Tpr1g1253 391 SUPERFAMILY L domain-like 35 364 - -
Tpr1g1253 391 PANTHER LRR RECEPTOR-LIKE KINASE 6 388 - -
Tpr1g1253 391 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 6 388 - -
Tpr1g1253 391 Gene3D Ribonuclease Inhibitor 186 364 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1253 Tpr-Chr1 11198768 11200492 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1253 81 321 Receptor kinase-like Gene Family AT5G62230 30.924 2.41e-19 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1253 - - gmx:100794756 665.611
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g1253 1 11198768 11200492 Tpr1g1253 1 11198768 11200492 ECH
Tpr6g3611 6 39255320 39256704 Tpr1g1253 1 11198768 11200492 PCT