Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1112 ATGGCACTCTCGCGTCTTCGTCAACCCATCATCTCTCATTCTCTTCGTATCCTCACTTCTTCCACCAGATCCATTTCGAGAACTCCTAATTCAAGGATTTATTCTGTCGTTGGTAATGGGAATCTAAGGCCTGCATCTTGGTCTGGGCTTACTGGAGTTCGTGATAGACCTTTGAAGTCAAAGTGGATTGATGTCAAATTCTTCTCATCTTCAGATTTTCCGCACGAAGTCCTTGGGATGCCAGCTTTATCTCCTACAATGACCCAAGGTAATATTGCAAAATGGAGGAAAAAAGAAGGGGATAAGATAGCAGTGGGTGATATACTATGTGAAATTGAAACTGACAAAGCTACACTTGAATTTGAAAGTCTTGAAGAAGGATTTCTGGCAAAGATATTGGTACCTGAAGGTTCAAAGGATGTGCCAGTTGGACAACCAATTGCAGTAACAGTTGAGGATGAAAGCGACATTCAAAATGTTTCTGCTGCTTCCGTGGGGGGTGAGAGCGGAGTTGAAGAGAAGAAACCAACACATCAGGATGTCGCAGATGAGGAGAGTAAACCAGAATCAACTTCTACAATTGATACATCAGATCTTCCACCTCACGCCGTTCTTGGAATGCCTGCTTTGTCCCCAACAATGAACCAAGGAAACATTGCTAAGTGGAATAAAAAGGAAGGAGACAAGATTGAAGTTGGTGACATATTATGCGAGATAGAGACAGACAAAGCTACCCTTGAATTTGAAAGTCTCGAAGAGGGGTACCTTGCTAAGATAGTTGCACCAGAAGGTTCAAAAGAAGTGGCAGTTGGACAGCCTATTGCAATAACAGTTGAAGATGCAGGTGATATTGAAGCTGTAAAGAATTCTATTAGCAGCAGCTCAGTTAACCAAAAGGAGAAGGCCACCCAACAGGGCACTAAAAGTGAGGTCAAAACTCAAAAAAACAATACCTCACGAATCAGTCCAGCTGCGAAGTTGCTAATTTTGGAATATGGATTGGATGCATCAACATTGAATGCAACTGGTCCCCATGGCACCCTACTGAAAGGCGATGTTCTTTCTGCAATTAAATCAGGAAAATTGTCTCCAAAACCTGCTTCATCTAAAGCAAAGGCATCGTCATCATCTCAGAGTCATCAAGTTGCGGCTTCACAAGAGTCAAAGTCTAACTTAAAGCAATCAGATGCTTATGAAGATTTTCCTAATAGTCAAATTCGCAAGGTGATTGCCAAGAGGTTATTGGAATCAAAACAAAATACGCCACACTTATATTTATCATCAGATGTTACACTGGATCCACTTCTTTCCCTTAGAAAGGATCTTAAAGAGCAGTATGACGTTAAAGTTTCAGTGAATGACATTATTATCAAAGTTGTAGCGGCCGCTCTCAGAAATGTACCAGAAGCGAACGCTTACTGGAATGAAGAGAAAGGCGAGGCCATCTTATGTGATTCTGTTGACATATCAATAGCAGTTGCCACTGAGAAGGGCTTGATGACTCCAATATTAAAAAATGCCGATCACAAGACAATATCTGCCATCTCCTCAGAGGTCAAGGAACTTGCTGCAAAAGCACGTGAAGGCAAGTTGAAGCCGCAAGAATTCCAAGGGGGCACTTTTAGTATTTCAAACTTGGGAATGTATCCCGTGGATAAATTCTGTGCTATTATAAATCCCCCACAGGCTTGCATTCTTGCCGTAGGGAGAGGCATCAAAGTTGTGGAACCAGTAATCGGAGCTGATGGAATTGAGAAGCCGTCAGTTGCTACCAAGTTGAACTTAACATTGTCTGCCGATCATCGCGTCTTTGATGGCAAAGTAGGAGGTGCATTTCTCTCTGCTTTGCAGTCAAACTTCAGTGATATAAGACGACTTCTTTTATAA 1887 0.4208 MALSRLRQPIISHSLRILTSSTRSISRTPNSRIYSVVGNGNLRPASWSGLTGVRDRPLKSKWIDVKFFSSSDFPHEVLGMPALSPTMTQGNIAKWRKKEGDKIAVGDILCEIETDKATLEFESLEEGFLAKILVPEGSKDVPVGQPIAVTVEDESDIQNVSAASVGGESGVEEKKPTHQDVADEESKPESTSTIDTSDLPPHAVLGMPALSPTMNQGNIAKWNKKEGDKIEVGDILCEIETDKATLEFESLEEGYLAKIVAPEGSKEVAVGQPIAITVEDAGDIEAVKNSISSSSVNQKEKATQQGTKSEVKTQKNNTSRISPAAKLLILEYGLDASTLNATGPHGTLLKGDVLSAIKSGKLSPKPASSKAKASSSSQSHQVAASQESKSNLKQSDAYEDFPNSQIRKVIAKRLLESKQNTPHLYLSSDVTLDPLLSLRKDLKEQYDVKVSVNDIIIKVVAAALRNVPEANAYWNEEKGEAILCDSVDISIAVATEKGLMTPILKNADHKTISAISSEVKELAAKAREGKLKPQEFQGGTFSISNLGMYPVDKFCAIINPPQACILAVGRGIKVVEPVIGADGIEKPSVATKLNLTLSADHRVFDGKVGGAFLSALQSNFSDIRRLLL* 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1112 628 CDD lipoyl_domain 207 276 - -
Tpr1g1112 628 SUPERFAMILY Single hybrid motif 78 166 IPR011053 -
Tpr1g1112 628 Pfam 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 398 627 IPR001078 GO:0016746
Tpr1g1112 628 MobiDBLite consensus disorder prediction 290 318 - -
Tpr1g1112 628 MobiDBLite consensus disorder prediction 360 397 - -
Tpr1g1112 628 Gene3D - 382 628 IPR023213 -
Tpr1g1112 628 PANTHER DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED 72 190 IPR045257 GO:0006086|GO:0045254
Tpr1g1112 628 PANTHER DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED 199 623 IPR045257 GO:0006086|GO:0045254
Tpr1g1112 628 CDD lipoyl_domain 80 149 - -
Tpr1g1112 628 ProSitePatterns 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 227 256 IPR003016 -
Tpr1g1112 628 MobiDBLite consensus disorder prediction 368 397 - -
Tpr1g1112 628 SUPERFAMILY CoA-dependent acyltransferases 394 628 - -
Tpr1g1112 628 MobiDBLite consensus disorder prediction 162 201 - -
Tpr1g1112 628 MobiDBLite consensus disorder prediction 171 191 - -
Tpr1g1112 628 ProSiteProfiles Biotinyl/lipoyl domain profile. 202 278 IPR000089 -
Tpr1g1112 628 SUPERFAMILY Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 313 359 IPR036625 GO:0016746
Tpr1g1112 628 ProSiteProfiles Biotinyl/lipoyl domain profile. 75 151 IPR000089 -
Tpr1g1112 628 ProSitePatterns 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 100 129 IPR003016 -
Tpr1g1112 628 Pfam e3 binding domain 320 354 IPR004167 GO:0016746
Tpr1g1112 628 PANTHER PYRUVATE DEHYDROGENASE PROTEIN X COMPONENT, MITOCHONDRIAL 72 190 - -
Tpr1g1112 628 PANTHER PYRUVATE DEHYDROGENASE PROTEIN X COMPONENT, MITOCHONDRIAL 199 623 - -
Tpr1g1112 628 SUPERFAMILY Single hybrid motif 204 293 IPR011053 -
Tpr1g1112 628 Gene3D - 199 303 - -
Tpr1g1112 628 Gene3D - 70 173 - -
Tpr1g1112 628 Gene3D - 320 361 IPR036625 GO:0016746
Tpr1g1112 628 TIGRFAM PDHac_trf_mito: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase 205 619 IPR006257 GO:0004742|GO:0006090|GO:0045254
Tpr1g1112 628 Pfam Biotin-requiring enzyme 205 276 IPR000089 -
Tpr1g1112 628 Pfam Biotin-requiring enzyme 78 149 IPR000089 -
Tpr1g1112 628 ProSiteProfiles Peripheral subunit-binding (PSBD) domain profile. 320 357 IPR004167 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1112 Tpr-Chr1 10001982 10015029 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1112 196 628 Acyl Lipid Metabolism Gene Families AT3G13930 42.888 4.53e-111 342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1112 K00627 - gmx:100780758 954.896
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g1112 1 10001982 10015029 Tpr1g1112 1 10001982 10015029 ECH