Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0846 ATGTTTTGCTGTCTCTCCCATCGTTTCACTCAAACAATGTTACCTAATCAAATCAACATTATCACCATTCTCCGAACAACATCAATTTCAATTCAATCAAAACCAAAATGTTTCATTCTCAAAAAACACTATTGTCTATGGTCAATGAAAAAAGACCCAGAATTAGAATCAGCACTATCACGAAATCGACGCTGGATAATCAACAATCAAATCAAAAACATTATCCTTCGTTACCCAAACAACGAAATCCCAATCGAAACTCTTCAGAAGAAATTCAAAACCCTAGATCTTCAAGGTAAAGCCCTAAATTGGATTTCTAAATACCCTTCTTGTTTCGATTTTCATCAACGTCATGTTCGTCTTACAAAACGCATGATTGAACTTGTTAATGAAGAACAATCGATTAAGGATTCTCTTGAACCTGTTTTTGTTAAGCGTCTTGCGAAAATTCTCATGCTTTCGGTTAATAATACTTTGAATGTGCTTAAAATTAATGAGATTAAGAATAGTTTAGGGTTTCCTGATGATTATTTGATTAGGATTGTGCCGAAATATCCGGATTTGTTTCGAATTGTTAATGAGAGTGGGAGGAGAAGTTCTATGGCGATTGAATTGATTCATTGGAACCCTGATTTTGCTGTTTCGGAAGTTGAAGCTTTAGCGTTGAAGAACGGAGGAAAAAAACCGAATTTTTCGTGTTGTTTGCCTTCGAGTTGGGTGAAATCGTTGGAAAAGTTTCGGGATTTTGAATCGGTTCCTTATGTTTCGCCTTATTCGGATCCGAGAGGGTTGGTCGAAGGGTCGAAGGAAATGGAGAAAAGGAATGTGGGTTTGGTTCATGAGTTGTTGTCATTGACTCTTTGGAAGAAAGTTTCAATTATGAAATTGGGTCATTTTAAAAGGGAGTTTTTTTTGCCTGATAAGTTGAATGTGTTGTTGCTTAAGCATCCTGGGATTTTCTATGTTTCTAATAAGTATAGGATTTATACTGTTCTACTTAGAGAAGGGTATGTTGGGTCTCAATTAGTTGATAAGGATCCTCTTGTGGTTGTTAAGGAGAAATTTGGGGAAATTATGCAAGAAGGACTTCATGAGTATAACCAAAGGCGGCGTCTTATTAATATCGAAAAGAAGAGAAGCAAAGGTCTGCCTTTGACTAGGGTGGATGAGGATCACATGAATGGTAGAAGAAGGAGAAGAAACAGGGTAGTTTCTGACGAAGATGATGAGGTTGATGGAGAAAATGGTAATAAGTTGGGAGGGTTGCTTGACCCTGAAGAAAGAAAAAGGTTTTATAAAGTTCTTTTTGATGATGATGGTTCATGA 1326 0.3665 MFCCLSHRFTQTMLPNQINIITILRTTSISIQSKPKCFILKKHYCLWSMKKDPELESALSRNRRWIINNQIKNIILRYPNNEIPIETLQKKFKTLDLQGKALNWISKYPSCFDFHQRHVRLTKRMIELVNEEQSIKDSLEPVFVKRLAKILMLSVNNTLNVLKINEIKNSLGFPDDYLIRIVPKYPDLFRIVNESGRRSSMAIELIHWNPDFAVSEVEALALKNGGKKPNFSCCLPSSWVKSLEKFRDFESVPYVSPYSDPRGLVEGSKEMEKRNVGLVHELLSLTLWKKVSIMKLGHFKREFFLPDKLNVLLLKHPGIFYVSNKYRIYTVLLREGYVGSQLVDKDPLVVVKEKFGEIMQEGLHEYNQRRRLINIEKKRSKGLPLTRVDEDHMNGRRRRRNRVVSDEDDEVDGENGNKLGGLLDPEERKRFYKVLFDDDGS* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0846 441 PANTHER PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC 33 411 IPR045040 GO:0003723
Tpr1g0846 441 MobiDBLite consensus disorder prediction 390 422 - -
Tpr1g0846 441 Pfam Plant organelle RNA recognition domain 50 362 IPR021099 GO:0003723
Tpr1g0846 441 MobiDBLite consensus disorder prediction 390 407 - -
Tpr1g0846 441 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE FAMILY PROTEIN 33 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0846 Tpr-Chr1 7143205 7145160 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0846 - - mtr:MTR_3g029990 709.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g0846 1 7143205 7145160 Tpr1g0846 1 7143205 7145160 ECH