Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0827 ATGGCATCCTTCAAACAACTTTCAATCCTATTATTCCCTTTGTTCCTCATTTCCCTATTCAAATCCTCATCTGCTGCAGGAATTGCAGTCTATTGGGGCCAAAATGGTGGTGAAGGTTCCTTAGCAGATGCTTGTAACACAAACAACTACCAATTTGTAAACATAGCTTTTCTTTCCTCTTTTGGCAATGGCCAAACTCCAACACTAAACCTTGCAGGACATTGTGATGCAGCCTCAAACGGTTGCACAAAGTTTAGTTCTGAAATCCAAGCTTGTCAAGCCAAAGGTATCAAAGTGTTGCTCTCTCTCGGAGGCGGCGCCGGAAGCTACTCTTTATCCTCATCTGATGATGCTACACAAGTAGCAAATTACCTATGGAACAATTTCTTGGGTGGCTCGTCAACTTCAAGACCATTAGGTGATGCTGTTTTGGATGGAATTGATTTTGATATTGAAGCTGGTGGTGAACATTTTGATGAACTTGCAAAAGCACTTAATGGTTTTAGTTCACAAAGGAAAGTTTATTTATCTGCAGCACCACAATGTCCTTACCCTGATGCTCATTTGGATTCAGCTATTAGTACTGGTTTATTTGACTATGTTTGGGTTCAGTTTTATAATAATCCTCAATGTCAATACTCAAGTGGTAACACTGCTAATCTTGTTAATGCTTGGAATCAATGGACTGCAAGTCAAGCTAAACAAGTGTTTTTAGGTGTTCCTGCTAATGATGCTGCTGCTCCAAGTGGTGGTTTTATTCCTTCTGATGTTTTGATTTCTCAAGTTCTTCCTGCTATTAAGGGTTCTGCTAAATATGGTGGAGTCATGATTTGGAATAGATTCTTTGATGGACAAAGTGAATATAGTAATGCTATTAAGGTCAGTGTTTAA 891 0.3917 MASFKQLSILLFPLFLISLFKSSSAAGIAVYWGQNGGEGSLADACNTNNYQFVNIAFLSSFGNGQTPTLNLAGHCDAASNGCTKFSSEIQACQAKGIKVLLSLGGGAGSYSLSSSDDATQVANYLWNNFLGGSSTSRPLGDAVLDGIDFDIEAGGEHFDELAKALNGFSSQRKVYLSAAPQCPYPDAHLDSAISTGLFDYVWVQFYNNPQCQYSSGNTANLVNAWNQWTASQAKQVFLGVPANDAAAPSGGFIPSDVLISQVLPAIKGSAKYGGVMIWNRFFDGQSEYSNAIKVSV* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0827 296 Pfam Glycosyl hydrolases family 18 28 253 IPR001223 GO:0005975
Tpr1g0827 296 CDD GH18_hevamine_XipI_class_III 26 293 IPR045321 -
Tpr1g0827 296 Gene3D Glycosidases 26 296 - -
Tpr1g0827 296 PANTHER ENDOCHITINASE 13 295 - -
Tpr1g0827 296 SUPERFAMILY (Trans)glycosidases 24 292 IPR017853 -
Tpr1g0827 296 PANTHER ACIDIC ENDOCHITINASE 13 295 - -
Tpr1g0827 296 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 144 152 IPR001579 GO:0004553|GO:0005975
Tpr1g0827 296 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 26 296 IPR001223 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0827 Tpr-Chr1 6892601 6893675 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0827 1 296 Glycoside Hydrolase AT5G24090 58.086 4.78e-125 357
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0827 K01183 - gmx:100783329 459.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g0827 1 6892601 6893675 Tpr1g0827 1 6892601 6893675 ECH