Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0825 ATGGCAAAAAACTCAAACACTTTCTTGTCTCTTATCCCTCTTTTGTTCCTAACTTTTGTTGCAACTTCCCATGCTGGTGGCATAGCAATCTATTGGGGCCAAAACGGCAACGAGGGTACCTTAGCCGAAGCATGTGCAACCGGAAAATACACCCACGTTATCATAGCATTTCTTAACAAATTTGGTAACGGTCAAACCCCTGAAATGAATCTTGCAGGTCACTGCAACCCGTCAATTCCAAATTCATGCACAAAATTCAGCTCAGAAATCAAAGATTGCCAAAGTAAAAAAATCAAAGTTTTAGTTTCAATAGGTGGTGGAATTGGAAGCTACTCTTTATCTTCAATTGAAGATGCAAGAAATGTTTCAACATTTTTATGGAACACTTTCTTGGGTGGCAAGTCATCTTCAAGACCATTAGGTGATGCTGTTTTAGATGGAATTGATTTTGATATTGAACTTGGTTCCACACAAAATTGGCAACACCTTGCACATTTTCTTAAAGGGTATAGTAGATATGGAAAAAAGGTGTATCTTGGTGCTGCTCCTCAGTGTCCAATTCCTGATAAATTTTTGGGCACTGCCCTTCAAACAGGACTTTTTGACTTTGTTTGGGTTCAATTTTACAATAATCCTCCTTGTCAATATAACGGAAACATAACTAATCTCGTGAATTCGTGGAATACATGGACAAGAACCGTTCCAACCATGAAGATATTTTTGGGGTTGCCGGCATCCACGGCGGCTGCCGGAAGTGGTTTTATTCCTGCAGATGTGTTGACTTCTAAAATTTTACCTGTGATTAAGAAAACAAGAAAGTATGGAGGAGTGATGCTTTGGTCAAGATTTCATGATTTGCAGAGTGGATATAGCACTTCTATTATTGGAAGCGTGTGA 897 0.3913 MAKNSNTFLSLIPLLFLTFVATSHAGGIAIYWGQNGNEGTLAEACATGKYTHVIIAFLNKFGNGQTPEMNLAGHCNPSIPNSCTKFSSEIKDCQSKKIKVLVSIGGGIGSYSLSSIEDARNVSTFLWNTFLGGKSSSRPLGDAVLDGIDFDIELGSTQNWQHLAHFLKGYSRYGKKVYLGAAPQCPIPDKFLGTALQTGLFDFVWVQFYNNPPCQYNGNITNLVNSWNTWTRTVPTMKIFLGLPASTAAAGSGFIPADVLTSKILPVIKKTRKYGGVMLWSRFHDLQSGYSTSIIGSV* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0825 298 Gene3D Glycosidases 26 297 - -
Tpr1g0825 298 Pfam Glycosyl hydrolases family 18 28 285 IPR001223 GO:0005975
Tpr1g0825 298 PANTHER ENDOCHITINASE 1 298 - -
Tpr1g0825 298 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 145 153 IPR001579 GO:0004553|GO:0005975
Tpr1g0825 298 SUPERFAMILY (Trans)glycosidases 23 294 IPR017853 -
Tpr1g0825 298 CDD GH18_hevamine_XipI_class_III 26 296 IPR045321 -
Tpr1g0825 298 PANTHER ACIDIC ENDOCHITINASE 1 298 - -
Tpr1g0825 298 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 26 298 IPR001223 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0825 Tpr-Chr1 6881608 6882792 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0825 14 298 Glycoside Hydrolase AT5G24090 63.140 2.50e-139 394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0825 K01183 - gmx:100818728 481.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g0825 1 6881608 6882792 Tpr1g0825 1 6881608 6882792 ECH