Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0824 ATGGCAAAAAATTCTCACACTTTGTTATTTTTTCTTCTCTTCCTCACTCTTGTAGGAACCTCCCATGCTGGTGGTATAGCCATCTACTGGGGCCAAAGCAGCGACGAGGGCACACTATTCGAAGCATGTGCCACTAGGAGATACACCCACATAAACATTGCATTTCTCTACAGGTTCGGCAATGGCCGAACCCCTGAATTGAACCTAGCAGGTCATTGCAACCCATCAACCAGTTCATGCACCAGAATAGGTAAACACATCAAGTATTGCCAAAGTAGAGGTATCACAATGTTGCTTTCTATCGGTGGTGGAATCGGAAGCTACTCTTTAGCTTCAATTGAGGATGCTAAAGACGTCTCAACATATTTATGGAACAATTTCTTGAGTGGTGAGTCATCTTCAAGACCATTTGGTGATGCTGTGTTAGATGGTATAGATTTTGATATCGAACTTGGCTCCACACGATATTGGCAATACCTTGCGCAATTTCTCAAGGAATATAATGGTGTTTATCTAAGTGCTGCTCCTCAATGTCCAATTCCTGATAGATTCTTGGGTAGAGCCATCGAAACAGGACTTTTTGACTTTGTTTGGATTCAGTTCTATAATAATCCACAATGTGATTATACTAATCATAACAAAAATAACCTTGTGAGTTCATGGAAAGAATGGAAAACTATTGTTCCAACTGGGGAGATATTTTTGGGGTTACCAGCCGCTAAGGGCGCAGCTGGAAGCGGTTTTATCCCGGCTGATGTGTTGGCGTCTGAAATCCTACCTATCATTGAAAATACATATAAGTATGGAGGGATTATGCTTTGGTCAAGATACTATGATGAGAGAACTGATTATAGCGCTTCCATTATGGCTACTGTGTGA 879 0.4141 MAKNSHTLLFFLLFLTLVGTSHAGGIAIYWGQSSDEGTLFEACATRRYTHINIAFLYRFGNGRTPELNLAGHCNPSTSSCTRIGKHIKYCQSRGITMLLSIGGGIGSYSLASIEDAKDVSTYLWNNFLSGESSSRPFGDAVLDGIDFDIELGSTRYWQYLAQFLKEYNGVYLSAAPQCPIPDRFLGRAIETGLFDFVWIQFYNNPQCDYTNHNKNNLVSSWKEWKTIVPTGEIFLGLPAAKGAAGSGFIPADVLASEILPIIENTYKYGGIMLWSRYYDERTDYSASIMATV* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0824 292 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 142 150 IPR001579 GO:0004553|GO:0005975
Tpr1g0824 292 SUPERFAMILY (Trans)glycosidases 21 288 IPR017853 -
Tpr1g0824 292 PANTHER ACIDIC ENDOCHITINASE 5 292 - -
Tpr1g0824 292 Gene3D Glycosidases 24 292 - -
Tpr1g0824 292 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 24 292 IPR001223 GO:0005975
Tpr1g0824 292 CDD GH18_hevamine_XipI_class_III 24 290 IPR045321 -
Tpr1g0824 292 Pfam Glycosyl hydrolases family 18 26 277 IPR001223 GO:0005975
Tpr1g0824 292 PANTHER ENDOCHITINASE 5 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0824 Tpr-Chr1 6879739 6880960 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0824 8 292 Glycoside Hydrolase AT5G24090 57.338 2.14e-127 363
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0824 K01183 - gmx:100809864 433.721
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g0824 1 6879739 6880960 Tpr1g0824 1 6879739 6880960 ECH