Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0820 ATGGAGAAGATGCATTACGCTGAAGAATTAGTGCGAGAATTTCTCGTGTTTCGAGGATTCACCAATACACTCGAAGCTTACGAAACCGAATTACGAACCGACGTTGGAAAAGGTTTTCAGGTTGATAAAATTCTTGACCTAATTTTCTCCTTGTACATTCCAAAGTTTCAGATCGATAAATTAGTAGCGCTTCTCGGTTTCTTCAAACACTATATCTCTTCATCTTCCGAAACCACACTCGTTTCAACTTTCTCTAAATTGGAAGCTTCTGTTTTACGCTTCTATGTTGTTCATGCTTTGCAATCCAATCGGAGAGATAAGGTTGTAGAATTTTTCACTGTTCATGGTCCTGATTTGTTGCAGAGTTCTCAGGATGATTGGACTCAATGGTTTGCAATTCCTTATGTGAAGAATCCACAATTGGATCCCGAATTTAGGATATTTTTCTCTAAGGAGTGGTATCAGGCATTGCATCTTTCTGTTAGAAATTTCTTTAGTGAGATCTTCAATGCTACTCGTCTACCTGCTCTACTGAAGATTAGTTCAGAGATGAATGCTACCAACATACTCAAGAGAGATATCGCACATCTAAATATCAAATTGTCAGAACTTCAGGCTTTACTCAATGAGAAAGAGGCACAATTAAGGCAGTTTAGAAGTATGGAAGGAAGTATTAGTTCATCACCAAGCAATTTGCGCGAAGACGGTACTCATATGTCAAAAGATTCTCCAGAGATTGAGCAAGATTTAGTTGTGGGTGAACCTGGAAATGTTCAGTTCGAGTTTATCCGCTCCAAGTCTGGTGACGATTCAACTTTCATATTGAATGACTATCTGGGAAATGGCAGAGCTGGCAACACCACTCTAAAAGAAAACGATGGGGAAGTGTCTGGGGAAGAAGACTTTGCTGAGGTCGAAGTAGAGCATCAGGAGACATTTTTGGGGCACACCAGTCCAATCAGCCGGTGCCGCTTCTCTGCATCTGGAAACAATATTGCAAGTGCTTCTCTAGATGGAACTGCCAGGATATGGACATATGATGCATCAACTTCGGCGTCTAGAAATGCAACCATATATTGTGGCACTGAAATTTTGTCACTTGACTGGGAATGCAAATCAGACCGCTTGCTTCTAATAGGTACATCCGATGGGTGCATTAAGGCATGGAATGTGGACGCAAAGAGAGTTGTTTGTGACCTTAACACAACTGAAGCATTTCCAAGTGTATTGGACATAAAGTGCAGTCCCGTTGAACCTATTTTTGTGACTGCAGCAGCATCTGGAGGGTCTGGTTCCAACTATTTTGACAACCTGGGTTTCGCTTCACTGACTGTATGGAACATGAAGACATGGAAAGCCATGACAGTCCTTCCTCTTGGAGAAGATCCACCAGCAATTACTTCTCTATGTTTCAATCACAACGGGAAGATTTTAGCAGCTTCTGCTGTTGATGGAATGATTCACATGTTTGACATGTCTGCTGGTCTACAAATCACTGGTTGGCCTGCACATGATTCTTCCATCAGTTCTATTCTTTTTGGACCAGATGAGACTAGCATTTTTAGCTTCGGCTCTGATGGGAAGATTTTTGAGTGGAGCTTGCAAAATCAAGGTCAAATCTTGTGGTCAAGAGACTGTAGTAGGTTTTGTTACCCTGTCAGTGGTTCAAATTATTACAGACAGGATATGGCATTAGATGCAAATGGGAGAAGACTCTTGGTAACATCCAGTTCAGTTAGAGCACCCATATATCAGGTTCAGGATCATTTGAATGGTTGGAGAACACTTTCTCACAGTGCTCCTATTACTGCTGTAGATTGGCATCCAACCTTGCCCATTTTCTTGACTGGATCAGCTGATAACTCTGTCCGAGTAACGTCATTATTATCATAG 1893 0.4147 MEKMHYAEELVREFLVFRGFTNTLEAYETELRTDVGKGFQVDKILDLIFSLYIPKFQIDKLVALLGFFKHYISSSSETTLVSTFSKLEASVLRFYVVHALQSNRRDKVVEFFTVHGPDLLQSSQDDWTQWFAIPYVKNPQLDPEFRIFFSKEWYQALHLSVRNFFSEIFNATRLPALLKISSEMNATNILKRDIAHLNIKLSELQALLNEKEAQLRQFRSMEGSISSSPSNLREDGTHMSKDSPEIEQDLVVGEPGNVQFEFIRSKSGDDSTFILNDYLGNGRAGNTTLKENDGEVSGEEDFAEVEVEHQETFLGHTSPISRCRFSASGNNIASASLDGTARIWTYDASTSASRNATIYCGTEILSLDWECKSDRLLLIGTSDGCIKAWNVDAKRVVCDLNTTEAFPSVLDIKCSPVEPIFVTAAASGGSGSNYFDNLGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSSISSILFGPDETSIFSFGSDGKIFEWSLQNQGQILWSRDCSRFCYPVSGSNYYRQDMALDANGRRLLVTSSSVRAPIYQVQDHLNGWRTLSHSAPITAVDWHPTLPIFLTGSADNSVRVTSLLS* 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0820 630 PANTHER OS05G0299300 PROTEIN 1 628 - -
Tpr1g0820 630 MobiDBLite consensus disorder prediction 220 243 - -
Tpr1g0820 630 Pfam WD domain, G-beta repeat 310 344 IPR001680 GO:0005515
Tpr1g0820 630 Pfam WD domain, G-beta repeat 595 625 IPR001680 GO:0005515
Tpr1g0820 630 SMART WD40_4 351 390 IPR001680 GO:0005515
Tpr1g0820 630 SMART WD40_4 589 627 IPR001680 GO:0005515
Tpr1g0820 630 SMART WD40_4 494 533 IPR001680 GO:0005515
Tpr1g0820 630 SMART WD40_4 306 345 IPR001680 GO:0005515
Tpr1g0820 630 SMART WD40_4 450 491 IPR001680 GO:0005515
Tpr1g0820 630 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 595 630 - -
Tpr1g0820 630 Gene3D - 558 628 IPR015943 GO:0005515
Tpr1g0820 630 SUPERFAMILY WD40 repeat-like 305 625 IPR036322 GO:0005515
Tpr1g0820 630 Coils Coil 194 221 - -
Tpr1g0820 630 MobiDBLite consensus disorder prediction 220 234 - -
Tpr1g0820 630 ProSiteProfiles Trp-Asp (WD) repeats profile. 501 536 IPR001680 GO:0005515
Tpr1g0820 630 Gene3D - 430 557 IPR015943 GO:0005515
Tpr1g0820 630 Gene3D - 200 429 IPR015943 GO:0005515
Tpr1g0820 630 Pfam Anaphase-promoting complex subunit 4 WD40 domain 460 513 IPR024977 -
Tpr1g0820 630 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 313 344 - -
Tpr1g0820 630 ProSiteProfiles Trp-Asp (WD) repeats profile. 595 630 IPR001680 GO:0005515
Tpr1g0820 630 ProSiteProfiles Trp-Asp (WD) repeats profile. 313 354 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0820 Tpr-Chr1 6853748 6859561 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0820 K24760 - gmx:100795332 1057.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g0820 1 6853748 6859561 Tpr1g0820 1 6853748 6859561 ECH