Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0808 ATGCACATGCTATGTAGTAAAACTCCTACTCAAAGTTTTTCACTATCCCGCTTCCAAGAAACTTGTTTGCGTGTTCTTTCATTCTGCAACTCAAATTCCCTCAAAGAAGGAATATGCATTCATAGCCCCATAATCAAATTGGGTCTTCAACATGATTTGTATTTAAACAACAATTTGTTGTCTTTATATGCTAAATGCTTTGGTCTTCATCATGCACGCCACTTGTTCGATGAAATGCCTGACAAAGATGTCGTATCATGGACTACGGTTCTGTCTTCACACACCAAGAATAAGTATCATTTTGATGCCCTTGAATTGTTTGATATGATGTTAGGATCGGGTCAGTATCCGAACGAGTTTACGTTGTCGAGTGCTTTAAGATCGTGTTCTGCTTTAGGGGAGTTTGATTGTGGGACAAAAATTCATGCTTCTGTTGTGAAGCTTGGGTTAGAGATGAATCCTTTTCTTGGTACTTCGTTGATCGAGTTTTATACAAAAAGTTGTTGTAGTACTTTTGAAGTTTATAAATTGCTTTCGTTAGTGAAGGGTGGTGGTGATGTTGTGTCTTGGACAACAATGGTTTCTTCTTTAGTGGAAACTGGTAAATACGGTGAAGCTTTTGGAGTTTACGTAAAAATGATTGAAGCAGGTGTTTACCCAAATGAATTCACATTTGTTAAACTCTTAGGTGCGGCGTCTTCTTTTCTCGGTTTGGCTTATGGAAAACTGCTGCATGCACAGTTAATCATATTTGGTGCTGAAATGAATTTGGTCTTGAAGACAGCCATTGTTGATATGTATTCAAAATTCAGACAGATGGAAGATGCTATTAAGGTCGCCAATATGACACCTGAATACGATGTGTGCTTATGGACAACCATTATCTCTGGATTCAATAAAAATTTGCAAGTTAGAGAGACTGTCGGTGCATTTCTTGATATGGAATTATCTGGCATCCTACCAAATAATTTTACATATGCTAGTTTATTGAACGCTAGCTCCTCAATTTTATCATTGGGCCTAGGGGAACAATTTCATTCGCGGGTTATCATTATTGGACTTGAGAATGATCTTTATATAGGAAATGCACTGGTTGATATGTACATGAAATGCTCCCACAGCACTACAAATGCTGTGAAAGCTTTTAGAGAGATAGCATCACCAAATGTCATCTCTTGGACTTCTTTGATTGCTGGTTTTGTAGAAAATGGATTAGAACAGTCTTTTCAGGTGTTTTCCGAGATGCAAGCAGCAGGAGTACAACCGAATTTCGTTACACTGTCTACGATTCTTGGAGCATGCAGCAAAGTGAGGTCTCTTGTTCCGACAATGATGCTCCATGGACATATCATAAAAACAAAAGCAGACATAGATATAGCTGTTGGTAATGCTCTTGTAGATGCTTATGCTGGAGGGGGGATGACAGATGAGGCATGGTCTGTAATTGGTACGATGAATCATAGAGATTCCATCACATACACATGTTTAGCCGCAAGATTAAACCAGAAGGGGGATCATGGAATGGCATTAAAAGTTTTCGTTCACATGTGCAATGATGGGATTAAAATGGATGAATTTAGCTTGGCAAGTTTTTTATCTGCTGCAGCTGGCTTAGGCACTATGGAAACTGGAAAGCAGCTGCACTGTTATTCTGTCAAATCAGGCTTCCATAGATGTAACTCAGTTTCAAACAGCTTAGTTCACTTGTACAGCAAATGTGGTAGTATTCACGATGCAAATAGAGCTTTCAAAGATATAAGTGAGCCAGATGCATTTTCATGGAACGGTTTGATATCTGGATTGGCATCAAATGGATATATTTCCCATGCTCTTTCTACTTTTGATGACATGAGGTTAGCAGGAGTTAAACCTGATTCTGTTACACTCTTATCACTGATTTCTGCTTGCAGTCACGGTGGTTTATTGGATCTTGGTCTGGAGTATTTCTATTCTATGCAAAAAGTATACCATATAACACCAAAGTTAGATCACTACGTCTGTTTAGTTGATCTCCTTGGTAGAGGTGGTCGACTAGAGGAAGCTATGGGAGTTATTGAAACAATGCCTTTCAAGCCAGACTCTTTGGTTTGCAAAACTTTATTAAATGCTTGCAATTTACATGGAAATGTTGCCTTGGGAGAAGACATGGCAAGGCGATGTCTTGAGCTTGATCCATCTGATCCTGCAATATATTTGCTGCTTGCAAACTTGTATGACAATGCTGGACTGTCTGATTTTGGAGAGAAGACACGTCGGTTGATGAGAGAAAGAGGTTTAAGGAGAAGTCCTGGGCAGTGTTGGATGGAGATACGGAGCAGAATTCATCACTTCTCTGCAGGAGAGAAGATTGACGAGGACGAGATTAATGAAAAATTGGCGTTTCTTATAACTGAATTCAGGAATAGAGGGTATCAATACCAAGAGAGTGAAGATAAGATATACCATTCAGAACAGTTGGCAGCTGCATATGGTGTTCTTAATGTACCGACTATGGCTCCAATACGCATATACAAGAATTCACTGATCTGCCCTCACTGCCATACTTTTATGATGCTTGCCACACAAGTGGTTGGTAGGGAGATAATTTTGAGGGATAGGAAACGGTTCCATTTCTTTAAGGATGGCCAGTGTTCTTGCAGAGGCCACTCATGA 2652 0.3952 MHMLCSKTPTQSFSLSRFQETCLRVLSFCNSNSLKEGICIHSPIIKLGLQHDLYLNNNLLSLYAKCFGLHHARHLFDEMPDKDVVSWTTVLSSHTKNKYHFDALELFDMMLGSGQYPNEFTLSSALRSCSALGEFDCGTKIHASVVKLGLEMNPFLGTSLIEFYTKSCCSTFEVYKLLSLVKGGGDVVSWTTMVSSLVETGKYGEAFGVYVKMIEAGVYPNEFTFVKLLGAASSFLGLAYGKLLHAQLIIFGAEMNLVLKTAIVDMYSKFRQMEDAIKVANMTPEYDVCLWTTIISGFNKNLQVRETVGAFLDMELSGILPNNFTYASLLNASSSILSLGLGEQFHSRVIIIGLENDLYIGNALVDMYMKCSHSTTNAVKAFREIASPNVISWTSLIAGFVENGLEQSFQVFSEMQAAGVQPNFVTLSTILGACSKVRSLVPTMMLHGHIIKTKADIDIAVGNALVDAYAGGGMTDEAWSVIGTMNHRDSITYTCLAARLNQKGDHGMALKVFVHMCNDGIKMDEFSLASFLSAAAGLGTMETGKQLHCYSVKSGFHRCNSVSNSLVHLYSKCGSIHDANRAFKDISEPDAFSWNGLISGLASNGYISHALSTFDDMRLAGVKPDSVTLLSLISACSHGGLLDLGLEYFYSMQKVYHITPKLDHYVCLVDLLGRGGRLEEAMGVIETMPFKPDSLVCKTLLNACNLHGNVALGEDMARRCLELDPSDPAIYLLLANLYDNAGLSDFGEKTRRLMRERGLRRSPGQCWMEIRSRIHHFSAGEKIDEDEINEKLAFLITEFRNRGYQYQESEDKIYHSEQLAAAYGVLNVPTMAPIRIYKNSLICPHCHTFMMLATQVVGREIILRDRKRFHFFKDGQCSCRGHS* 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0808 883 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 83 117 IPR002885 -
Tpr1g0808 883 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 186 220 IPR002885 -
Tpr1g0808 883 Pfam DYW family of nucleic acid deaminases 813 881 IPR032867 GO:0008270
Tpr1g0808 883 PANTHER - 124 325 - -
Tpr1g0808 883 PANTHER - 377 805 - -
Tpr1g0808 883 PANTHER - 185 437 - -
Tpr1g0808 883 PANTHER - 21 138 - -
Tpr1g0808 883 PANTHER - 287 527 - -
Tpr1g0808 883 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 489 523 IPR002885 -
Tpr1g0808 883 Gene3D Tetratricopeptide repeat domain 138 236 IPR011990 GO:0005515
Tpr1g0808 883 PANTHER BNACNNG07920D PROTEIN 377 805 - -
Tpr1g0808 883 PANTHER BNACNNG07920D PROTEIN 185 437 - -
Tpr1g0808 883 PANTHER BNACNNG07920D PROTEIN 287 527 - -
Tpr1g0808 883 PANTHER BNACNNG07920D PROTEIN 21 138 - -
Tpr1g0808 883 PANTHER BNACNNG07920D PROTEIN 124 325 - -
Tpr1g0808 883 Pfam PPR repeat 491 521 IPR002885 -
Tpr1g0808 883 Pfam PPR repeat 665 688 IPR002885 -
Tpr1g0808 883 Pfam PPR repeat 463 485 IPR002885 -
Tpr1g0808 883 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 389 422 IPR002885 -
Tpr1g0808 883 Gene3D Tetratricopeptide repeat domain 343 441 IPR011990 GO:0005515
Tpr1g0808 883 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 590 624 IPR002885 -
Tpr1g0808 883 TIGRFAM PPR: pentatricopeptide repeat domain 85 119 IPR002885 -
Tpr1g0808 883 TIGRFAM PPR: pentatricopeptide repeat domain 491 525 IPR002885 -
Tpr1g0808 883 TIGRFAM PPR: pentatricopeptide repeat domain 188 222 IPR002885 -
Tpr1g0808 883 TIGRFAM PPR: pentatricopeptide repeat domain 592 626 IPR002885 -
Tpr1g0808 883 Pfam PPR repeat family 388 435 IPR002885 -
Tpr1g0808 883 Pfam PPR repeat family 589 637 IPR002885 -
Tpr1g0808 883 Pfam PPR repeat family 186 230 IPR002885 -
Tpr1g0808 883 Pfam PPR repeat family 287 332 IPR002885 -
Tpr1g0808 883 Pfam PPR repeat family 82 129 IPR002885 -
Tpr1g0808 883 Gene3D Tetratricopeptide repeat domain 560 798 IPR011990 GO:0005515
Tpr1g0808 883 Gene3D Tetratricopeptide repeat domain 442 559 IPR011990 GO:0005515
Tpr1g0808 883 Gene3D Tetratricopeptide repeat domain 237 339 IPR011990 GO:0005515
Tpr1g0808 883 Gene3D Tetratricopeptide repeat domain 11 137 IPR011990 GO:0005515
Tpr1g0808 883 Pfam E motif 707 769 IPR046848 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0808 Tpr-Chr1 6747508 6752657 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0808 103 882 Glycoside Hydrolase AT3G49170 33.909 2.13e-148 457
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0808 - - gmx:100791770 1355.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g0808 1 6747508 6752657 Tpr1g0808 1 6747508 6752657 ECH