Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0790 ATGGCAAGAACGCAAGAAAACCCATGGCTTCGTAAATTAAGACTTGAACTTGCTTCGATTCGTATTGTAACTTACGAAAATGCTAGTCTTTGGTTCTTAAGGACTGAATTACATATTTCTCATCAAAACATGAAGAATCCAATATTCCAAAATTCCTACATTATTGGTGTGATCTCCGCAGTTTTGATATTTGGATCATTAGTAGAATGCAGAGTACCAAGTAGTTCGAACAAAATTGATTATACTGCTATCAATTGCAGAAAACACAGTGCAATTTTGACCGATTTTGGCGCTGTTGGCGATGGAAAAACCCTTAACACAAAGGCATTTAACTCTGCAATAACCAAACTTAGCCAATATGCAAATGATGGTGGCGCAACACTTATTGTTCCGCCAGGTAAATGGTTAACCGGAAGCTTCAATCTCACAAGCCATTTCACTCTTTTTCTCCAAAAGGATGCTGTCATTCTTGCATCTCAGAATGAAGCAGATTGGCCTCAACTTCCTGTTTTACCCTCTTATGGAAGAGGAAGAGATGCACCAGCCGGAAGATATAGTAGTCTCATTTTCGGAACTCATCTCACTGATGTTATAATTACCGGTAATAATGGGACAATTGATGGACAAGGATCTGTTTGGTGGGAGAAGTTCAAAAAGGGTGAAGTGAAACTTACTAGACCATACATGATTGAACTCATGTACTCTGATCAAATCCAAATCTCAAATCTCAATTTGATCAATTCCCCTTATTGGTTTGTCCATCCAATTTACAGCAGTAACATAATCGTAAATGGACTTACCATTCGTGCTCCATTGGATGTTCCAAACACAGATGGCATCAACCCAGATTCATGTACTAATGTTAGAATTGAAGACAACTATATCGAATCTGGTGATGATTGTATCGCAATTAAAAGTGGATGGGATCAGTATGGAATCAAATTTGGAAAGCCATCAGAACATATCGTCATAAGAAGGGTAACATGTATATCTCCTAAGAGTGCTATGGTTGCAATAGGCAGTGAAATGTCAGGTGGAGTCCAAGATGTTAGAATCGAAGACTTAACCGCCATCAACACAGAATCAGCTGTTAGAATTAAATCAGCTGTCGGTAGAGGTGGATTCGTGAAGGACATTTTTGTTAAAGGATTGAATTTGAACACAATGAAATATGTGTTTTGGATGACTGGTTCTTATGGAGATCATCCTGATAGCAAATTTGATCCAAAAGCATTGCCTGAGATTAATGGAATAAATTTTAGAGATGTTACTGCTAAGAATGCGACGATTGCAGGGAAACTAGAAGGAATTTCTAATGATCCTTTTACAGGAATATGTATTTCTAATGCGACTATTGAAATGTTTGTAAAAAAGGATTCAGATATTGAAATGGATGCAAAAAAGGTGAAGCTTCCATGGAATTGCACTGATGTTGCTGGAGTTACAAGCAATGTGGTTCCTCAACCATGTGCTTTGTTACCTGATAAGAAGGTGGATTGTCCTTTTCCAACTGATAAACTGGTCATTGAAAATGTTCAGTTCAAGACTTGTTTAGTATCCAAAATTATACTAGTTTTTTTTAGTGGTTAG 1590 0.3736 MARTQENPWLRKLRLELASIRIVTYENASLWFLRTELHISHQNMKNPIFQNSYIIGVISAVLIFGSLVECRVPSSSNKIDYTAINCRKHSAILTDFGAVGDGKTLNTKAFNSAITKLSQYANDGGATLIVPPGKWLTGSFNLTSHFTLFLQKDAVILASQNEADWPQLPVLPSYGRGRDAPAGRYSSLIFGTHLTDVIITGNNGTIDGQGSVWWEKFKKGEVKLTRPYMIELMYSDQIQISNLNLINSPYWFVHPIYSSNIIVNGLTIRAPLDVPNTDGINPDSCTNVRIEDNYIESGDDCIAIKSGWDQYGIKFGKPSEHIVIRRVTCISPKSAMVAIGSEMSGGVQDVRIEDLTAINTESAVRIKSAVGRGGFVKDIFVKGLNLNTMKYVFWMTGSYGDHPDSKFDPKALPEINGINFRDVTAKNATIAGKLEGISNDPFTGICISNATIEMFVKKDSDIEMDAKKVKLPWNCTDVAGVTSNVVPQPCALLPDKKVDCPFPTDKLVIENVQFKTCLVSKIILVFFSG* 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0790 529 Pfam Pectate lyase superfamily protein 94 149 IPR024535 -
Tpr1g0790 529 Pfam Glycosyl hydrolases family 28 151 462 IPR000743 GO:0004650|GO:0005975
Tpr1g0790 529 PANTHER PECTIN LYASE-RELATED 59 517 - -
Tpr1g0790 529 SMART pbh1 285 306 IPR006626 -
Tpr1g0790 529 SMART pbh1 258 284 IPR006626 -
Tpr1g0790 529 SMART pbh1 415 449 IPR006626 -
Tpr1g0790 529 SMART pbh1 44 65 IPR006626 -
Tpr1g0790 529 SMART pbh1 347 368 IPR006626 -
Tpr1g0790 529 PANTHER ENDO-POLYGALACTURONASE-LIKE PROTEIN 59 517 - -
Tpr1g0790 529 Gene3D - 73 474 IPR012334 -
Tpr1g0790 529 SUPERFAMILY Pectin lyase-like 90 494 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0790 Tpr-Chr1 6664398 6672364 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0790 41 517 Glycoside Hydrolase AT3G61490 62.322 0.0 634
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0790 - - gmx:100779166 747.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g0790 1 6664398 6672364 Tpr1g0790 1 6664398 6672364 ECH