Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0789 ATGGAGGAAGATGTTGAAGTTAAATTTCTGGCACTAGATCAGCGCAAAAAGCTGAAAGTTCAGTCACCGTGTCTTCTTGGTTTATCAATATGGTTCTATGGAGTGATAATACAGGGTGCTACTTGGCTGATGATTATTAGTGTGATCTCTGCAGTTCTGATATTTGGATCATTAGTAGAATGCAGAGTACCAAGTAGTTCTAAATTGAACAATTTTGATTACACTGCTATCAATTGCAGAAAACACAGTGCAATTTTGACAGATTTTGGTGCTGTTGGTGATGGAAAAACCCTTAACACAAAAGCATTTAATTCAGCAATAACCAAACTTAGCCAATATGCAAATGATGGTGGTGCATTACTTATTGTTCCACCTGGTAAATGGTTAACTGGTAGTTTCAATCTCACAAGCCATTTCACTCTTTTTCTTCAAAAAGATGCTGTCATTCTTGGATCTCAGGATGAAGCAGATTGGCCTGAACTTCCTGTATTACCGTCTTATGGAAAAGGACGAGATGCAACTGATGGAAGGCTTAGTAGTCTCATTTTTGGAACTAATCTCACTGATATTATAATTACTGGTAACAATGGGACAATTGATGGACAAGGATCCATTTGGTGGGAGAAGTTCAAAAAGGGTCAATTGAAAATCACAAGGCCATACTTGATTGAGATTATGTATTCTGATCAAATCCAAATAACAAATCTCACTTTGATCAACTCTCCATCATGGTTTGTCCATCCAGTTTACAGCAGTAACATAATTGTAAATGGACTTACCATTCTTGCACCACTGAATGTTCCGAACACAGATGGAATCAACCCAGATTCATGTACTAATGTTAGAATTGAAGACAACTATATCGAATCTGGTGATGATTGTATTGCGATTAAAAGTGGATGGGATCAGTATGGAATTAAATTCGGAAAGCCATCAGAACATATCATCATAAGAAGGGTAACATGTATATCTCCTAAGAGTGCTATGGTTGCAATAGGCAGTGAAATGTCAGGTGGAGTCCAAGATGTTAGAATCGAAGACTTAACCGCCATCAACACAGAATCAGCTGTTAGAATTAAAACAGCTATCGGTAGAGGTGGATTCGTGAAGGACATTTTTGTAAAAGGATTGAATTTGAACACAATGAAATATGTGTTTTGGATGACTGGTTCTTATGGACAGCACCCTGATGACAAGTTTGATCCAAAAGCATTGCCTAAGATTAATGGAATAAATTATAAAGATGTTACTGCAAAGAATGTGACGATTGCAGGGAAACTAGAAGGAATTTCTAATGATCCTTTTACAGGAATATGTATTTCTAATGCGACTATTGAAATGTTTGTAAAAAAGGATTCAGATATTGAAATGGATGCAAAAAAGGTGAAGCTTCCATGGAATTGCACTGATGTTGCTGGAGTTACAAGCAATGTGGTTCCTCAACCATGTGCTTTGTTACCTGATAAGAAGGTGGATTGTCCTTTTCCAACTGATAAACTGGTCATTGAAAATGTTCAGTTCAAGACTTGTTCCTTCAAAAGTGTTATCTGA 1551 0.3688 MEEDVEVKFLALDQRKKLKVQSPCLLGLSIWFYGVIIQGATWLMIISVISAVLIFGSLVECRVPSSSKLNNFDYTAINCRKHSAILTDFGAVGDGKTLNTKAFNSAITKLSQYANDGGALLIVPPGKWLTGSFNLTSHFTLFLQKDAVILGSQDEADWPELPVLPSYGKGRDATDGRLSSLIFGTNLTDIIITGNNGTIDGQGSIWWEKFKKGQLKITRPYLIEIMYSDQIQITNLTLINSPSWFVHPVYSSNIIVNGLTILAPLNVPNTDGINPDSCTNVRIEDNYIESGDDCIAIKSGWDQYGIKFGKPSEHIIIRRVTCISPKSAMVAIGSEMSGGVQDVRIEDLTAINTESAVRIKTAIGRGGFVKDIFVKGLNLNTMKYVFWMTGSYGQHPDDKFDPKALPKINGINYKDVTAKNVTIAGKLEGISNDPFTGICISNATIEMFVKKDSDIEMDAKKVKLPWNCTDVAGVTSNVVPQPCALLPDKKVDCPFPTDKLVIENVQFKTCSFKSVI* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0789 516 SMART pbh1 278 299 IPR006626 -
Tpr1g0789 516 SMART pbh1 251 277 IPR006626 -
Tpr1g0789 516 SMART pbh1 340 361 IPR006626 -
Tpr1g0789 516 Gene3D - 68 467 IPR012334 -
Tpr1g0789 516 Pfam Glycosyl hydrolases family 28 175 455 IPR000743 GO:0004650|GO:0005975
Tpr1g0789 516 PANTHER PECTIN LYASE-RELATED 50 511 - -
Tpr1g0789 516 SUPERFAMILY Pectin lyase-like 83 487 IPR011050 -
Tpr1g0789 516 PANTHER ENDO-POLYGALACTURONASE-LIKE PROTEIN 50 511 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0789 Tpr-Chr1 6657596 6664030 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0789 48 510 Glycoside Hydrolase AT3G48950 65.672 0.0 647
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0789 - - gmx:100779166 731.095
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g0789 1 6657596 6664030 Tpr1g0789 1 6657596 6664030 ECH