Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0769 ATGTGGCCATTCACCAAAAAAGGGGTTTCTGGATTTTCATGGAATTCAACTGCTGAACAAGTTACCAATGAAATCGATGCTACTGGTCTCACTGCCATTGTCACTGGAGCATCCAGTGGCATTGGCGCTGAGACTACTCGTGTCCTTGCTTTGCGCGGCGCTCATGTGATTATGGGTGTGAGAAATATGGTTGCTGCTAAAGATGTCAAAGAAACAATACTCAAGGATATTCCCTCAGCTAAAGTTGATGCCATCGAGTTAGATCTCAGTTCATTGGACTCTGTCAAGAAATTTGCATCCGAGTTTAAGTCGTCTGGCCGACCACTAAACATCTTAATAAACAATGCAGGAATTATGGCATGCCCTTTCAGTCTGTCCAAAGACAACATTGAACTACAGTTTGCCACCAATCACATAGGCCATTTTCTCTTGACAAATCTTTTGTTGGATACTATGAAGAAAACAACACGTGAAAGTAAGAAAGAAGGAAGAATTGTTAATGTCTCCTCTGAAGCTCACAGATTTGCATATTCTGAAGGAATCCGTTTTGACAAAATCAATGACGAATCAAGTTATAATAACTGGCGTGCATACGGGCAGTCTAAGCTTGCTAACATTTTACATGCCAACCAACTTGCAAAACATCTCAAGGAAGATGGGGTGAATATTACTGCAAATTCTCTTCATCCAGGAACAATTGTCACCAATCTTTTCCGATATAACAATGCAGTGAACGGTCTAATAAGTGTGGTTGGGAAACTTGTGATGAAAAATGTCCAGCAGGGAGCAGCCACAACATGCTATGTAGCATTGCACCCACAAGTGAAGGGAGTTAGTGGTGAGTATTTTTCAGACAGTAATGTGTACAAAACAACTCCGCATGGAAAAGACGTTGATTTGGCTAAGAAACTCTGGGATTTCAGCATCAATTTGGTTAAGCAGAAATAG 948 0.4103 MWPFTKKGVSGFSWNSTAEQVTNEIDATGLTAIVTGASSGIGAETTRVLALRGAHVIMGVRNMVAAKDVKETILKDIPSAKVDAIELDLSSLDSVKKFASEFKSSGRPLNILINNAGIMACPFSLSKDNIELQFATNHIGHFLLTNLLLDTMKKTTRESKKEGRIVNVSSEAHRFAYSEGIRFDKINDESSYNNWRAYGQSKLANILHANQLAKHLKEDGVNITANSLHPGTIVTNLFRYNNAVNGLISVVGKLVMKNVQQGAATTCYVALHPQVKGVSGEYFSDSNVYKTTPHGKDVDLAKKLWDFSINLVKQK* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0769 315 Pfam short chain dehydrogenase 31 177 IPR002347 -
Tpr1g0769 315 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 29 291 IPR036291 -
Tpr1g0769 315 PANTHER RETINOL DEHYDROGENASE 2 314 - -
Tpr1g0769 315 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 107 118 IPR002347 -
Tpr1g0769 315 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 163 171 IPR002347 -
Tpr1g0769 315 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 198 217 IPR002347 -
Tpr1g0769 315 Gene3D - 19 315 - -
Tpr1g0769 315 PRINTS Glucose/ribitol dehydrogenase family signature 31 48 IPR002347 -
Tpr1g0769 315 PRINTS Glucose/ribitol dehydrogenase family signature 107 118 IPR002347 -
Tpr1g0769 315 PRINTS Glucose/ribitol dehydrogenase family signature 157 173 IPR002347 -
Tpr1g0769 315 PRINTS Glucose/ribitol dehydrogenase family signature 198 217 IPR002347 -
Tpr1g0769 315 PRINTS Glucose/ribitol dehydrogenase family signature 221 238 IPR002347 -
Tpr1g0769 315 PANTHER SHORT-CHAIN DEHYDROGENASE TIC 32 2 314 - -
Tpr1g0769 315 CDD retinol-DH_like_SDR_c_like 29 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0769 Tpr-Chr1 6484201 6488225 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0769 33 183 Acyl Lipid Metabolism Gene Families AT1G62610 31.481 8.10e-11 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0769 - - gmx:100784001 534.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g0769 1 6484201 6488225 Tpr1g0769 1 6484201 6488225 ECH