Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0754 ATGGTTCAGCAATGGGGAATCAAGTTCGCCGTCCTCCTCATCACCGACCACTTCGGCAAAATCGTCGCTAATGTCTGCGAAAAACTACTTAAACAAGGACCTCTCACTTTGGACCTCCTTGTTCGCTACACCGAACTTTCAACGGTGCATGTTAAGAATTCATTGCTTGTATTAATTCAACATAATTGCGTTCAGCCATTCCATTTTCAAGGTGTTACGATTGATGAATCGAAAGTTAAGACACAATACTTGGTGCTGTTTGATAACATATTACATCGGGCGAGATTTCCAAAATTCATGGAGATAGTGTCAGAGGAACTTGGTGATAAATGTGCACAGATTTTCAAAGGATTGCTCCACAATGGTAGACTTAATTTGAAACAGATGGTTGACAGAGCAAGTCAAGAAAAGGCAGAGGCTGAAGATACTGTACGAGAGAGCCTTTGTAAACTTCTGATGGCTCGATATGTTGAACGCTGTCCAATCCCTGAGGTTTCGATAGTTGAAGAAGTAGATGATAAAAAGAAACGTGGTTCTAAGGCTGCCAAGGAATTCAAAGCACCAGTGACAACAGAAGATCGTGTTAGAGAAGCTGCAACGCATGGGGATACGGCCAGATTTTCACTCACTGCAGATACAGGATATAATAGTGACGAAGAAACAAAGCCATCTGATATAAGTGTTGCAGAAAATGTTGCAAAAGAGGAGTCAACTCTTTGGCGTGCAAATTTTGAGGAGTTCATACGTTATCTTAGGGATAAGGCATTGATTGAGAATGTAAGAACACGAATGGATGATGGAGCTGCTACCGTCTTACGTGCAATATTGGAGGCAACAAGAAATAAGGAGAAACAAGTGAAAATAGAAAAATCAGTTCCCTTACCACTGGATACAATTTTCACAGAGGTGATGAAGACTGAAAATGGCCGAACTATGACCATGGATCGTGTTAAAGCTTCCCTTGTTCAGTTGGGTTGTTCAAATCAGATGTTATATGAATATATTATTGATTTAGAGCACATTATTCATTGGGCTCGTAATGAAGAGGTTGAGTCAATTGTGTTAAAAAGGTATGGAAGGGATGCCTACCGAATGTTCAGGTATCTGTCAAAGGCAAAACAGTTTTGTCCAACAGATAAGATTGCAGATGATACTCTTGTTGAGAAAAAGGAAGCTCCAAAGTTACTGTTCAAGTTATGGAAGGAAAACTACTTGCAAATGGAGAAAGTAACTGTCACACTCTCCGCGGGAAATACTGGTAAATTATCAACTATTTATATGTGGCAAGTAAATCAGCCTCTGCTTTGGGAACATGTTCTGGACGAGCTGTACCATGGTGCCTTAAATTTGAAACTAAGAATAGCTTTTGAGCAAGAAACTAATGAAGAGATTTTAAATATTCCTAAGAAGAAGATTAACGACTCCGAGCCACTGCGGAAGAAACACAGACGGCTACAAAATGTTATTTTACTCTTGGGATCATCATTGATAAAACTTGATGATACTATTATGCTTTTCAATGACTTCTGA 1530 0.3948 MVQQWGIKFAVLLITDHFGKIVANVCEKLLKQGPLTLDLLVRYTELSTVHVKNSLLVLIQHNCVQPFHFQGVTIDESKVKTQYLVLFDNILHRARFPKFMEIVSEELGDKCAQIFKGLLHNGRLNLKQMVDRASQEKAEAEDTVRESLCKLLMARYVERCPIPEVSIVEEVDDKKKRGSKAAKEFKAPVTTEDRVREAATHGDTARFSLTADTGYNSDEETKPSDISVAENVAKEESTLWRANFEEFIRYLRDKALIENVRTRMDDGAATVLRAILEATRNKEKQVKIEKSVPLPLDTIFTEVMKTENGRTMTMDRVKASLVQLGCSNQMLYEYIIDLEHIIHWARNEEVESIVLKRYGRDAYRMFRYLSKAKQFCPTDKIADDTLVEKKEAPKLLFKLWKENYLQMEKVTVTLSAGNTGKLSTIYMWQVNQPLLWEHVLDELYHGALNLKLRIAFEQETNEEILNIPKKKINDSEPLRKKHRRLQNVILLLGSSLIKLDDTIMLFNDF* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0754 509 Pfam RNA polymerase III subunit RPC82 helix-turn-helix domain 10 65 IPR013197 -
Tpr1g0754 509 Gene3D - 243 332 IPR036388 -
Tpr1g0754 509 Coils Coil 123 150 - -
Tpr1g0754 509 Gene3D - 2 76 IPR036388 -
Tpr1g0754 509 Gene3D - 87 168 IPR036388 -
Tpr1g0754 509 Gene3D - 338 431 IPR036388 -
Tpr1g0754 509 PANTHER RNA POLYMERASE III DNA DIRECTED -RELATED 3 509 IPR039748 GO:0003697|GO:0005666
Tpr1g0754 509 Pfam RNA polymerase III subunit RPC82 147 314 IPR008806 GO:0003677|GO:0006351
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0754 K03023 - gmx:100784750 612.838
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g0754 1 6360262 6367597 Tpr1g0754 1 6360262 6367597 ECH