Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tpr1g0741 | ATGAATTCAATAGCCCTTTTAGGTTTAAGGAAAAGGGTTGTCAACAAAATTTCTCATTGTTTTGTTATTTCGCGGAGATTATGTAAGTTTGATGATGGTAATAATAATGAGTTTGATTGCATTGAAGAGCCTTTGAAAAAAATAGTTTCAGATTTTGATTCTAATTTGGATGAAAATTTCCGTTTAAACGAGGATTTAAGTTTTGATCAAAAGCCGTTTTCAGTTAGAAAAGGGTTCTTAGAAAGTGTTAAGTTAGATGCTAAGAGGGCTCTTGAGGTTCTTAGACAAGATGGTCCTGGTCTTGATGCTAGGTTAGTTTTAAAGGAGTTGCGTATAAAGCCTTCGGGGATTCTTGTTAGAGAGGTTCTCCTTGGAATTTTGAAGAGCATAAATAGTGAGAATAAGACTAGGTGTGCAAAGCTGGCTTATAAGTTTTTTGTGTGGTGTAGTCAGCAGGAGGGTTACCGGCACACTCTGAATGCCTATCACTTGATTATGGATATATATGCTAAGTGCGAAGAGTTTAAGGCGTCGTGGAGGTTGGTTGATGAGATGATTGAGAAAGGTTATCCGGTTACTGCTCGTACTTTCAATATTTTGATTCGTACTTGTGGCGAGGCAGGCTTGGCGAAGACATTGGTGGAGAGTTTCATAAAATCGAAGAACTTTAACTTTTTGCCTTATAAGCATTCCTATAATGCAATTCTACACAGTTTTCTTGTATTAAACCAGTACAAATTGATTGAGTGGCTTTATGATCAGATGCGCGATGATTTTTCCCCAGATGTTTTAACTTATAATATTGTCCTGTATGCCAAGTACAGACTTGGAAAGGTGGATCAGTTCAACATACTGTTTGCTGAGATGGGTAGAAATGGATTTTCTCCAGATTTACATACCTACAACATTCTTCTTCATGCTCTCGGTAAAGGGGACAAACCACTTGCAGCTCTTAATCTTTTAAATCACATGAGAGAAACAGGTATAGAGCCAACTGTACTTCATTTCACCACATTGATAGATGGACTCAGCAGAGCCGGGAATCTCGTTGCCTGCAAATATTTTTTTGATGAAATGATAAAGAATGGGTGCATGCCAGATGTGGTGGCTTATACTGTTATGATAACAGGGTATGTAGTGGCTGGTGAGCTTGAGAAAGCACAAGAAATGTTTCAAGAGATGCTTTCTAAGGAACAAGTCCCAAATGTTTTTACATACAATTCCATGATTCGGGGGTTATGCATGGCAGGTAAATTTGATGAAGCATGCTCAATGTTCAAGGAAATGGGAAGTAAAGGTTGTAGTCCAAACTCTGTTGTCTATATTACATTAGTGAGTTGTTTGCGGAGTGCTGGAAAGGTTGCTGAGGCACGTGAGGTGATAAGACAAATGATGGAGACGGGGAAGTATGCCCACTTACTTTCCAGATTTAAAGAGTATAAGATGTAG | 1449 | 0.3844 | MNSIALLGLRKRVVNKISHCFVISRRLCKFDDGNNNEFDCIEEPLKKIVSDFDSNLDENFRLNEDLSFDQKPFSVRKGFLESVKLDAKRALEVLRQDGPGLDARLVLKELRIKPSGILVREVLLGILKSINSENKTRCAKLAYKFFVWCSQQEGYRHTLNAYHLIMDIYAKCEEFKASWRLVDEMIEKGYPVTARTFNILIRTCGEAGLAKTLVESFIKSKNFNFLPYKHSYNAILHSFLVLNQYKLIEWLYDQMRDDFSPDVLTYNIVLYAKYRLGKVDQFNILFAEMGRNGFSPDLHTYNILLHALGKGDKPLAALNLLNHMRETGIEPTVLHFTTLIDGLSRAGNLVACKYFFDEMIKNGCMPDVVAYTVMITGYVVAGELEKAQEMFQEMLSKEQVPNVFTYNSMIRGLCMAGKFDEACSMFKEMGSKGCSPNSVVYITLVSCLRSAGKVAEAREVIRQMMETGKYAHLLSRFKEYKM* | 483 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tpr1g0741 | 482 | Gene3D | Tetratricopeptide repeat domain | 353 | 481 | IPR011990 | GO:0005515 | |
| Tpr1g0741 | 482 | Gene3D | Tetratricopeptide repeat domain | 246 | 352 | IPR011990 | GO:0005515 | |
| Tpr1g0741 | 482 | Gene3D | Tetratricopeptide repeat domain | 113 | 241 | IPR011990 | GO:0005515 | |
| Tpr1g0741 | 482 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 297 | 331 | IPR002885 | - | |
| Tpr1g0741 | 482 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 367 | 401 | IPR002885 | - | |
| Tpr1g0741 | 482 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 158 | 192 | IPR002885 | - | |
| Tpr1g0741 | 482 | PANTHER | OS10G0506000 PROTEIN | 1 | 481 | - | - | |
| Tpr1g0741 | 482 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 437 | 471 | IPR002885 | - | |
| Tpr1g0741 | 482 | Pfam | PPR repeat | 231 | 257 | IPR002885 | - | |
| Tpr1g0741 | 482 | Pfam | PPR repeat family | 161 | 204 | IPR002885 | - | |
| Tpr1g0741 | 482 | Pfam | PPR repeat family | 366 | 414 | IPR002885 | - | |
| Tpr1g0741 | 482 | Pfam | PPR repeat family | 261 | 309 | IPR002885 | - | |
| Tpr1g0741 | 482 | Pfam | PPR repeat | 432 | 464 | IPR002885 | - | |
| Tpr1g0741 | 482 | Pfam | PPR repeat | 328 | 359 | IPR002885 | - | |
| Tpr1g0741 | 482 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 332 | 366 | IPR002885 | - | |
| Tpr1g0741 | 482 | TIGRFAM | PPR: pentatricopeptide repeat domain | 369 | 403 | IPR002885 | - | |
| Tpr1g0741 | 482 | TIGRFAM | PPR: pentatricopeptide repeat domain | 161 | 193 | IPR002885 | - | |
| Tpr1g0741 | 482 | TIGRFAM | PPR: pentatricopeptide repeat domain | 404 | 438 | IPR002885 | - | |
| Tpr1g0741 | 482 | TIGRFAM | PPR: pentatricopeptide repeat domain | 439 | 468 | IPR002885 | - | |
| Tpr1g0741 | 482 | TIGRFAM | PPR: pentatricopeptide repeat domain | 299 | 333 | IPR002885 | - | |
| Tpr1g0741 | 482 | TIGRFAM | PPR: pentatricopeptide repeat domain | 336 | 368 | IPR002885 | - | |
| Tpr1g0741 | 482 | SUPERFAMILY | TPR-like | 367 | 466 | IPR011990 | GO:0005515 | |
| Tpr1g0741 | 482 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 262 | 296 | IPR002885 | - | |
| Tpr1g0741 | 482 | PANTHER | TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED | 1 | 481 | - | - | |
| Tpr1g0741 | 482 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 402 | 436 | IPR002885 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Tpr1g0741 | Tpr-Chr1 | 6258722 | 6261815 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Tpr1g0741 | 180 | 468 | Glycosyltransferase | AT1G05670 | 29.553 | 5.27e-35 | 137 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tpr1g0741 | - | - | gmx:100792512 | 749.199 |
Event-related genes