Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0733 ATGGTTAAGGTAACGATAGTTGGAAGGGGAAGTGATGGGTTACCTCTAGCACAAGGACTAAGATATGTGAATGAAGAAAATTCCTATCTTTCATTTTATAGGCAAAAAGCAGAGTTTATACTCCAAGAAATTTCAAAAGGAACATTGACACCTTCCATGATGACCATTCTCATTGACCATTACTGCTTCAACTTCTTGGTAGAGAATGGAGTTGTTTACGTTGTTTTATGTGAGTCTACATACCCAAGAAAACTGGCATTTCATTACCTACAAGACATACAAAAAGAGTTTGAGAAGTTTGATAAAACCCTCATAGGCAAAATCACAAAGCCATATAGCTTTGTCAAATTCGAAACAATGAGAAGGTTAGTAGTTACTCCTCAACCTACATCCTCAACAATATGGTGTTCCCCACGCCTTGAGGTGATTGCAATGAAATGGACACCAATTTTGATCATGGTCATTACCTCTATTGCTCTTCTATGGGCAAGCTTAGTCCTCAAAGATGACTATATTATTTCATCAGGCTGA 531 0.3748 MVKVTIVGRGSDGLPLAQGLRYVNEENSYLSFYRQKAEFILQEISKGTLTPSMMTILIDHYCFNFLVENGVVYVVLCESTYPRKLAFHYLQDIQKEFEKFDKTLIGKITKPYSFVKFETMRRLVVTPQPTSSTIWCSPRLEVIAMKWTPILIMVITSIALLWASLVLKDDYIISSG* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0733 176 PANTHER VESICLE-TRAFFICKING PROTEIN SEC22B 126 174 IPR044565 GO:0005484|GO:0006888|GO:0006890
Tpr1g0733 176 PANTHER VESICLE-TRAFFICKING PROTEIN SEC22B 1 120 IPR044565 GO:0005484|GO:0006888|GO:0006890
Tpr1g0733 176 SUPERFAMILY SNARE-like 1 119 IPR011012 -
Tpr1g0733 176 ProSiteProfiles Longin domain profile. 6 121 IPR010908 -
Tpr1g0733 176 PANTHER SNARE-LIKE SUPERFAMILY PROTEIN 126 174 - -
Tpr1g0733 176 PANTHER SNARE-LIKE SUPERFAMILY PROTEIN 1 120 - -
Tpr1g0733 176 CDD Longin 5 119 IPR010908 -
Tpr1g0733 176 Pfam Regulated-SNARE-like domain 37 119 IPR010908 -
Tpr1g0733 176 Gene3D Longin domain 1 122 - -
Tpr1g0733 176 SMART Longin_2 40 120 IPR010908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0733 Tpr-Chr1 6205885 6207471 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0733 K08517 - gmx:100781527 265.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g0733 1 6205885 6207471 Tpr1g0733 1 6205885 6207471 ECH