LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr1g0730	ATGGGTAAGCAAAAACAACAAGTCATTTCCCGTTTCTTCGCTCCTAAACCCAAACCCCCTCCACCGACCACCGATCCAACTCCACCTTCTTCCTCTCCTCGTCCCACCCCTCCCACTCCCAAAATCTCCGCCACCGTCAATTTCTCTCCATCCAAACGCCGCCTAATCTCTCAACTAACATCATCCCCTAACAAAAAACCCAAACTCTCACCAGATACTAACAACCCTATACCCTCTACATCCAATCCCTCCCTCCACCAACGCTTCCTCCAGAAGCTTCTAGAACCTTCTCCTCCAGACCCACAACTTCCTTCATCTTCCAAACCGGTAAAGTTTACTCCTTTAGAGCATCAGGTAGTGGAACTCAAAGCTAAATACCCTGATGTTCTTTTAATGATTGAAGTTGGTTACAAGTATCGGTTTTTCGGCGAAGATGCTGAGAATGCTGCTAGAGTTTTGGGTATATATGCACATATGGATCATAATTTTTTAACTGCTAGTATACCAACTGTTCGATTAAATGTCCATGTGAGGAGGCTTGTAAGTGCAGGGTATAAGGTTGGTGTTGTTAAGCAGACTGAGACTGCTTCCATTAAAGCCCATGGTTTGAACCGGGCTGGCCCTTTTTGCCGAGGCTTGTCGGGGTTGTACACCAAGGCGACGTTGGAGGCAGCTCAGGATTTGGGAGGAGGGGAAGATGAGTGTGGGAGTGTGAGTAACTATTTGTTGTGTGTTGTGGAGAAGAGCATTTTGGGAGAGAACAAATCTAATTGTGGTGTGGAAGGTGGTTTTGATGTGAGGATTGGAATTGTTGGTGTGGAGATATCAACCGGAGATGTTGTTTATGGAGAGTTTAATGATAATTTTTTGAGGAGTGAACTTGAGGCCGTTGTTGCGAGTTTGTCTCCTGCTGAGTTACTTCTTGGAGATCCTCTTTCCAAACAAACCGAGAAGTTATTACTGGCTTTTGCTGGACCCTCCTCAAATGCCCGTGTGGAGCGTGCCTCACGAGATTGCTTCACTGATGGAGGTGCTTCTGCTGAAGTTATGACCTTGTATGAGAACATGCATGTTGACAGTCCACCAGATTCAATGCAAAGCAATGAACTAACCGAGCATAGAAGTCAGCAGATGGTAGTTAAGGAGGTAATGAACCTGCCAGATTTGGCGGTCGAAGCTTTGGCCTTAACTATTCGCCATTTGAAGAGATTTGGTTTTGAAAGAATTCTGTGCTCAGGTGCTTTAAGGCCCTTCATAAGCAATACAGAGATGACTCTCTCAGCCAATGCACTTCAACAACTGGAGGTTTTACAAAATAACAGTGATGGATCTGAGAGTGGTTCCTTGCTGCAAATTATGAACCAGACTCTTACTATATTTGGTTCCAGGCTTCTTAGGCATTGGGTATCACACCCATTGTGTGATCAATCCTTGATTGCTGCCCGTCTTAATGCTGTATCTGAAATCGCAGAGTCCATGGGAACTTGTAATGGCATGAAGAATCTTGAATGTTTTGAGGAAGATTCTGATGTAGCAATTGTGCAGCCTGCTTTAGCAAACATACTTTCATCGGTTTTGGCATCCCTGGGCCGGGCACCTGATATACAGCGTGGGATTACTAGAATTTTCCATCTCACTGCTACCCCATCTGAGTTTATTGCCGTTATACAAGCTGTTTTGTCTGCTGGAAAACGGCTTCAGCAACTTAACATAGGAGAGGGGGATAGCGATGATAGTAATAATAAATTGCGCTCTGAATTGTTGAAGAAGTTAATTTCAACTGCTTCCTCTGCAAGTGTTATTGGTAATGCTGCAAAGATGTTGTCATCTTTAAATAAAGACTCTGCTTATCAAGGAGATCTGATAAATATGTTCGTTGCAACTGAGGGACAATTTCCAGAGGTAATTACAGCTAGAAAGGATTTTCAGATGGCAGAAGAACAATTAGATTCTTTGATTAACTTGTACCGCAAACGGCTTGGAATGCGAAATTTGGAATATATGTGTGTTTCTGGTATAACTCACTTGATAGAGTTATCAACTGATGTAAAAGTGCCTTCAAATTGGGTCAAGGTAAATGGCACAAAGAAAACAATTCGGTATCACCCTCCTGAAGTAGTTACAGCATTGGATGGGTTATCCTTAGCGAAAGAGAAGCTTACTGTTGCTTGCCGAGCTGCTTGGGATAGCTTTCTGAAGGACTTCAGTAAACACTATGCGGAGTTCCAAGCTTCTATTCAAGCACTAGCTGCTTTAGATTGTCTGCATTCACTTGCCATTCTTTCAAGAAATAAGGGTTATGTCCGCCCAGTTTTTGTAGACAATCATGAGCCTGTTCAGATACAAATTTGCTCTGGTAGACATCCGGTTTTGGAGACTACCTTACAAAATAATTTTGTCCCAAATGATACAAACATGCATGCAGATAGAGAGTACTGTCAAATTGTAACTGGACCCAATATGGGGGGGAAAAGTTGCTATGTTCGCCAAGTGGCTCTGATCACTCTCATGGCTCAGGTGGGTTCCTTTGTACCAGCATCATCAGCAAAACTGTATGTCCTGGATGGGATCTACACCCGGATGGGTGCTTCTGACAGTATTCAGTTAGGGAGAAGCACCTTCCTAGAAGAATTGAGTGAGACATCACATATACTTCATAGATGTACAGGACGTTCACTCGTTATACTTGATGAGCTTGGGAGAGGTACAAGTACACATGACGGCATGGCCATCGCTTATGCGACATTACATTATCTTCTGAAGCAGAGGAAAAGCTTGGTCCTCTTTGTCACTCATTATCCAAAGATTGCTAGTCTGGAAACTGAATTTCCAGGGTCCGTAGCAGCATATCACATGTCCCATCTGACCTCACACAATGATGCGAGTGGAAAATCCGATGATCATGAAAATGTCACTTATCTATATAAGCTCGTACCAGGTGTTTCAGAGAGGAGTTTTGGTTTTAAGGTTGCCCAGCTTGCACAGTTACCATCACATTGCATTAGCCGAGCTATTGTCATGGCTTCCAAACTAGAAGCACTAGTAAACAGTAGAATGCATGGTAGATCAGGAAAGCAGTTGTTGTTGGATGCACCTGTAATTGATCCAGAGCATGAGCCACATGATTGTCCACATCAAGAATTTGGTAGTGCTTATAAGGAATTCTATTCAAACTTAAAAGCTGCAATATTAGATGATGACCATGCAAAAAGCTTTCAACTTTTAGAGAATGCTAGAAGCATTGCAAAGACATTAGTTAGCAGATGA	3267	0.4304	MGKQKQQVISRFFAPKPKPPPPTTDPTPPSSSPRPTPPTPKISATVNFSPSKRRLISQLTSSPNKKPKLSPDTNNPIPSTSNPSLHQRFLQKLLEPSPPDPQLPSSSKPVKFTPLEHQVVELKAKYPDVLLMIEVGYKYRFFGEDAENAARVLGIYAHMDHNFLTASIPTVRLNVHVRRLVSAGYKVGVVKQTETASIKAHGLNRAGPFCRGLSGLYTKATLEAAQDLGGGEDECGSVSNYLLCVVEKSILGENKSNCGVEGGFDVRIGIVGVEISTGDVVYGEFNDNFLRSELEAVVASLSPAELLLGDPLSKQTEKLLLAFAGPSSNARVERASRDCFTDGGASAEVMTLYENMHVDSPPDSMQSNELTEHRSQQMVVKEVMNLPDLAVEALALTIRHLKRFGFERILCSGALRPFISNTEMTLSANALQQLEVLQNNSDGSESGSLLQIMNQTLTIFGSRLLRHWVSHPLCDQSLIAARLNAVSEIAESMGTCNGMKNLECFEEDSDVAIVQPALANILSSVLASLGRAPDIQRGITRIFHLTATPSEFIAVIQAVLSAGKRLQQLNIGEGDSDDSNNKLRSELLKKLISTASSASVIGNAAKMLSSLNKDSAYQGDLINMFVATEGQFPEVITARKDFQMAEEQLDSLINLYRKRLGMRNLEYMCVSGITHLIELSTDVKVPSNWVKVNGTKKTIRYHPPEVVTALDGLSLAKEKLTVACRAAWDSFLKDFSKHYAEFQASIQALAALDCLHSLAILSRNKGYVRPVFVDNHEPVQIQICSGRHPVLETTLQNNFVPNDTNMHADREYCQIVTGPNMGGKSCYVRQVALITLMAQVGSFVPASSAKLYVLDGIYTRMGASDSIQLGRSTFLEELSETSHILHRCTGRSLVILDELGRGTSTHDGMAIAYATLHYLLKQRKSLVLFVTHYPKIASLETEFPGSVAAYHMSHLTSHNDASGKSDDHENVTYLYKLVPGVSERSFGFKVAQLAQLPSHCISRAIVMASKLEALVNSRMHGRSGKQLLLDAPVIDPEHEPHDCPHQEFGSAYKEFYSNLKAAILDDDHAKSFQLLENARSIAKTLVSR*	1089

Annotation information

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Tpr1g0730	1088	SUPERFAMILY	DNA repair protein MutS, domain III	428	764	IPR036187	-
Tpr1g0730	1088	Gene3D	-	426	759	-	-
Tpr1g0730	1088	Pfam	MutS domain V	814	1012	IPR000432	GO:0005524\|GO:0006298\|GO:0030983
Tpr1g0730	1088	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	767	1012	IPR027417	-
Tpr1g0730	1088	Pfam	MutS domain III	429	759	IPR007696	GO:0005524\|GO:0006298\|GO:0030983
Tpr1g0730	1088	Gene3D	DNA repair protein MutS, domain I	104	230	IPR016151	GO:0005524\|GO:0006298\|GO:0030983
Tpr1g0730	1088	PANTHER	DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER	92	1084	IPR045076	GO:0005524\|GO:0006298\|GO:0030983\|GO:0140664
Tpr1g0730	1088	SMART	DNAend	444	794	IPR007696	GO:0005524\|GO:0006298\|GO:0030983
Tpr1g0730	1088	SUPERFAMILY	DNA repair protein MutS, domain I	106	221	IPR016151	GO:0005524\|GO:0006298\|GO:0030983
Tpr1g0730	1088	PIRSF	Msh6	102	1031	IPR017261	GO:0006298\|GO:0030983
Tpr1g0730	1088	SMART	mutATP5	811	1009	IPR000432	GO:0005524\|GO:0006298\|GO:0030983
Tpr1g0730	1088	MobiDBLite	consensus disorder prediction	41	85	-	-
Tpr1g0730	1088	Gene3D	-	767	1031	IPR027417	-
Tpr1g0730	1088	MobiDBLite	consensus disorder prediction	14	40	-	-
Tpr1g0730	1088	Pfam	MutS domain I	113	223	IPR007695	GO:0005524\|GO:0006298\|GO:0030983
Tpr1g0730	1088	Pfam	MutS domain II	240	322	IPR007860	GO:0005524\|GO:0006298\|GO:0030983
Tpr1g0730	1088	MobiDBLite	consensus disorder prediction	1	85	-	-
Tpr1g0730	1088	SUPERFAMILY	DNA repair protein MutS, domain II	239	439	IPR036678	GO:0005524\|GO:0006298\|GO:0030983
Tpr1g0730	1088	ProSitePatterns	DNA mismatch repair proteins mutS family signature.	892	908	IPR000432	GO:0005524\|GO:0006298\|GO:0030983
Tpr1g0730	1088	Gene3D	MutS, connector domain	236	423	IPR036678	GO:0005524\|GO:0006298\|GO:0030983
Tpr1g0730	1088	PANTHER	DNA MISMATCH REPAIR PROTEIN MSH3	92	1084	-	-
Tpr1g0730	1088	Gene3D	-	609	735	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr1g0730	Tpr-Chr1	6181344	6190802	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr1g0730	K08736		-	gmx:100789883	1622.45

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tpr1g0730	1	6181344	6190802	Tpr1g0730	1	6181344	6190802	ECH