Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0701 ATGCATAGAGTGGCGAAACACAGTGTAAATCGCATTTGTTTGCTTACGCAGAGCCGTTATTTCCTTTCCCAACTTCGCCACACACACAACAATCTTCACTCTTCTTCATCAATGGACTCAATCAAGAAAGACCAAGCTACACCCGTACCTGAAGACCCAGAGAAGAAGAAGAAAAAGGAAGAAAAGGCAAGAGAGAAGCAATTGAAGCTTGAGAAGTTTCTTCAGAAGAAAGCTCAGCAACAACAAGCTCAACAATCATCCACTGCTGCTAAAAAGAGTGAAAAGAAAACTGTGAAGCGTGTCCCAGAGGATGAAAATCCTGCGGATTACATTGATCCTGAGACTCCATTGGGTGATAAGAAACAAATGTCCAGGCAATTGGCAAAACAGTATAATCCAACTGCCGTGGAGAAATCGTGGTACGAGTGGTGGGAGAAATCAAAGTATTTTGTGGCAGATGCTAGCAGCACAAAACCACCTTTTGTTATTGTTTTGCCTCCACCAAACGTGACAGGTGCTCTCCATATAGGTCATGCTCTAACCGCTGCAATAGAGGATACGATGATTCGTTGGCGAAGAATGTCTGGCTACAATACTCTGTGGGTGCCTGGGATGGATCATGCGGGAATTGCTACACAGGTGGTTGTGGAGAAAAAGATAATGCGTGAAAAGCAACTAACCAGGCATGATTTGGGCCGTGAAAAATTTATCTCAGAGGTTTGGGAATGGAAAAACAAGTACGGGGGCACAATTTTGCAACAATTACGCCGATTAGGAGCATCTCTGGATTGGTCTCGTGAGTGCTTCACAATGGATGACAAAAGATCTAAGGCTGTGACTGATGCTTTTGTGATTCTTTACAAGCAAGGCCTTGTCTATAGGGACTTACGGTTAGTAAATTGGGATTGTGTGTTACGAACAGCAATATCTGATATTGAGGTGGATTATATTGATATAAAAGAAAGGACCCTGCTAAAGGTTCCAGGATACGACAAACCTGTTGAATTTGGCGTTTTAACAAAATTTGCTTACACACTGGAAGGGAACCTAGGTGAAATTGTTGTTGCCACAACTAGGATAGAAACTATGCTTGGCGACACTGCAATTGCCGTACATCCTACTGATGACCGATACAGTCAATTTCATGGAAAATATGCTGTTCACCCATTTAATGGCAGAAAACTTCCTATAATCTGTGATGCTATTCTTGTTGATCCAAAGTTTGGGACAGGTGCTGTTAAGATTACACCAGCCCATGATCCTAATGATTTTGAGGTTGGAAAACGTCACAACCTTGAATTTATTAATGTTTTCACTGACGATGGGAAAATAAATTCCAATGGTGGCTCTGAATTTTTGAACATGCCACGATTTAAAGCCCGGGAAGCAATAACTGAAGCATTAAAAAAGAAGGATCTTTATAGAGGTTCTGAAAACAATGAGATGCGCCTTGGTGTATGTTCAAGAAGCAATGATGTTATAGAGCCCATGATAAAGCCACAGTGGTATGTTAATTGCAGTGATATCGCAAAGGAAGCTCTTCATGCTGTCACAGATGAGGAAAACAAAAGGGTAGAGATTATTCCAAAACAATATGTGGCTGATTGGAAGAGATGGCTTGAAAACATACGTGATTGGTGCATTTCACGGCAGCTATGGTGGGGTCACCAAATTCCTGCATGGTATGTCACTTTAGAGGATGATATACTGCAGGAATTGGGTGCTTACAATGACCATTGGGTAGTGGCAAGAACTGAAGAGGAAGCCCGAGATGAGGCTAACCAAAGGTATAGTGGAAAGAAGTTTCATTTAAGCCGGGACCCCGATGTTCTTGATACATGGTTTTCTTCTGGTCTGTTCCCATTAACTGTGCTGGGATGGCCTGATGACACAGAAGACCTGAAGGCATTCTATCCGACTTCTGTTTTGGAAACTGGCCATGATATCCTCTTTTTCTGGGTTGCTCGTATGGTGATGTTAGGAATGAAGTTGGGTGGTGATGTGCCTTTTAGCAAGATTTATTTGCACCCTATGATTCGTGATGCACATGGGCGCAAGATGTCCAAGTCTTTGGGGAATGTTATTGATCCCATTGAGGTGATAAATGGTATATCACTAGAAGGTCTACATAAGAGGTTAGAAGGAGGTAACCTTGACCCTAAAGAACTAGCTGTTGCAATAGAGGGTCAGAAGAAGGACTTTCCAAATGGTATTGAAGAATGTGGTGCTGATGCCCTCCGTTTTGCCCTGGTCTCATACACAGCTCAGTCTGACAAAATTAACCTAGATATTCAAAGGGTGGTTGGGTATCGACAATGGTGTAATAAACTATGGAATGCAGTACGATTTGCTATGAGCAAGCTCGGAGATAATTATACCCCTCCTGCAGATTTGACTCCAGATGCTCTCCCATTTAGCTGCCAGTGGATACTATCTGTGTTGAATAAAACCATATCGAAAACATCCAAGTCTCTAGAATCATATGAGTTCTCGCAAGCTACCACTGCTGTGTATTCTTGGTGGCAGTATCAATTGTGTGATGTGTTCATTGAAGTGATCAAGCCTTACTTTTCTGGCAATGATACCAAGTTTGATTCCGAAAGACACGCTGCTCAATATACTTTATGGCTTTGTCTGGACAATGGCCTGCGATTGCTTCATCCTTTTATGCCTTTTGTCACAGAAGAATTGTGGCAACGCCTTCCTTCTCCCAATGATTCTAAGAGAGAAGAATCTATCATGATAGCTGATTATCCGTCAGCTATTGAGAGCTGGAATAATGAAGAGGTGGAGAGTGAGATGGACGTCATTGAGTCTACCGTTAAGTCTCTCAGGTCACTGGCAAAAGAGAGACGTGACAGGCGACCGGCTTTTGTTCTTTGCCAAACGCCGAAGCTTGAAAAGATTATTAACAGCCATCAATTGGAGATTACTACACTAGCTAATCTATCCTCTTTAACCGTATTCACTGACATTGAAGCGGCTCCACCTGGATATGCCAATACTGTCGTCATTAAAAACCTTTCTGTTTATTTGGAGCTTCAAGGAATTAATTCTGCAGAAGCGGAACTTGCAAAGGCGAAGAAGATAGACGATCTGAAAAACCAAATAGACAGATTAGAGAAGACTATGAATGGTCCAGGTTATGAAAAGGTACCGCAAGAAGTTCGATCCAAGCATGCTGAGAGGCTAGAATCCTTAATCTCTAGTCTCAAAGTGCTCCAACTTGATTGA 3234 0.4224 MHRVAKHSVNRICLLTQSRYFLSQLRHTHNNLHSSSSMDSIKKDQATPVPEDPEKKKKKEEKAREKQLKLEKFLQKKAQQQQAQQSSTAAKKSEKKTVKRVPEDENPADYIDPETPLGDKKQMSRQLAKQYNPTAVEKSWYEWWEKSKYFVADASSTKPPFVIVLPPPNVTGALHIGHALTAAIEDTMIRWRRMSGYNTLWVPGMDHAGIATQVVVEKKIMREKQLTRHDLGREKFISEVWEWKNKYGGTILQQLRRLGASLDWSRECFTMDDKRSKAVTDAFVILYKQGLVYRDLRLVNWDCVLRTAISDIEVDYIDIKERTLLKVPGYDKPVEFGVLTKFAYTLEGNLGEIVVATTRIETMLGDTAIAVHPTDDRYSQFHGKYAVHPFNGRKLPIICDAILVDPKFGTGAVKITPAHDPNDFEVGKRHNLEFINVFTDDGKINSNGGSEFLNMPRFKAREAITEALKKKDLYRGSENNEMRLGVCSRSNDVIEPMIKPQWYVNCSDIAKEALHAVTDEENKRVEIIPKQYVADWKRWLENIRDWCISRQLWWGHQIPAWYVTLEDDILQELGAYNDHWVVARTEEEARDEANQRYSGKKFHLSRDPDVLDTWFSSGLFPLTVLGWPDDTEDLKAFYPTSVLETGHDILFFWVARMVMLGMKLGGDVPFSKIYLHPMIRDAHGRKMSKSLGNVIDPIEVINGISLEGLHKRLEGGNLDPKELAVAIEGQKKDFPNGIEECGADALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFAMSKLGDNYTPPADLTPDALPFSCQWILSVLNKTISKTSKSLESYEFSQATTAVYSWWQYQLCDVFIEVIKPYFSGNDTKFDSERHAAQYTLWLCLDNGLRLLHPFMPFVTEELWQRLPSPNDSKREESIMIADYPSAIESWNNEEVESEMDVIESTVKSLRSLAKERRDRRPAFVLCQTPKLEKIINSHQLEITTLANLSSLTVFTDIEAAPPGYANTVVIKNLSVYLELQGINSAEAELAKAKKIDDLKNQIDRLEKTMNGPGYEKVPQEVRSKHAERLESLISSLKVLQLD* 1078
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0701 1077 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 168 179 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Tpr1g0701 1077 Coils Coil 56 83 - -
Tpr1g0701 1077 MobiDBLite consensus disorder prediction 74 91 - -
Tpr1g0701 1077 Coils Coil 1023 1043 - -
Tpr1g0701 1077 SUPERFAMILY Nucleotidylyl transferase 127 772 - -
Tpr1g0701 1077 Gene3D - 335 480 IPR009008 GO:0002161|GO:0006418
Tpr1g0701 1077 Coils Coil 927 947 - -
Tpr1g0701 1077 Gene3D - 768 951 - -
Tpr1g0701 1077 PANTHER VALYL-TRNA SYNTHETASES 46 1072 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Tpr1g0701 1077 SUPERFAMILY Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 774 1029 IPR009080 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Tpr1g0701 1077 CDD ValRS_core 159 762 - -
Tpr1g0701 1077 Gene3D HUPs 128 324 IPR014729 -
Tpr1g0701 1077 SUPERFAMILY ValRS/IleRS/LeuRS editing domain 334 484 IPR009008 GO:0002161|GO:0006418
Tpr1g0701 1077 MobiDBLite consensus disorder prediction 92 107 - -
Tpr1g0701 1077 PRINTS Valyl-tRNA synthetase signature 161 172 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Tpr1g0701 1077 PRINTS Valyl-tRNA synthetase signature 372 389 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Tpr1g0701 1077 PRINTS Valyl-tRNA synthetase signature 489 502 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Tpr1g0701 1077 PRINTS Valyl-tRNA synthetase signature 607 628 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Tpr1g0701 1077 PRINTS Valyl-tRNA synthetase signature 638 656 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Tpr1g0701 1077 Pfam Anticodon-binding domain of tRNA ligase 808 950 IPR013155 GO:0004812|GO:0006418
Tpr1g0701 1077 PANTHER BNAA08G31530D PROTEIN 46 1072 - -
Tpr1g0701 1077 Pfam tRNA synthetases class I (I, L, M and V) 140 763 IPR002300 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Tpr1g0701 1077 TIGRFAM valS: valine--tRNA ligase 128 1063 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Tpr1g0701 1077 Gene3D HUPs 509 761 IPR014729 -
Tpr1g0701 1077 MobiDBLite consensus disorder prediction 45 73 - -
Tpr1g0701 1077 MobiDBLite consensus disorder prediction 31 122 - -
Tpr1g0701 1077 Hamap Valine--tRNA ligase [valS]. 127 1077 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Tpr1g0701 1077 CDD Anticodon_Ia_Val 762 901 IPR033705 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0701 Tpr-Chr1 5942715 5951913 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0701 K01873 - gmx:100798111 1761.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g0701 1 5942715 5951913 Tpr1g0701 1 5942715 5951913 ECH