Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0502 ATGTTGCAAACCCTAGTAATACCCGCAAACTTCCGCTTCGCGAATCGAATGTTCCTCCGAAGAAGCTTTAGGGTTCGCGCATTCACTTCTTCCTCCTCCGATTATGAAGACCAGTCTCGTGGTGGCCTCCCTCGCTTCTACTCCGAAACTCTTCCTCCTTCCAAGGGCAATGTTATTCGGGTAAAAGGCGATGAATTCTGGCACATGACAAAAGTATTGAGGTTGTCTACCAACGATAGGGTACAGCTCTTCAATGGAAAAGGAGGTTTGGTAGAAGGGTCCATACAGAACATTGACCGCACTGGAGTTGATTTTGTTGCATTGACTGATCTGAAGTTAATGCCTGCGCAGAATTTTCAATTACATGTTTTTTCTGGTTTTGGTACTCTGAAGGGTGGCCGGGCTGACTGGCTTGTAGAGAAGTGTACGGAACTTGGAGCCAGTAGTGTTACTCCGCTGTTGACTGAACGTTCTCCGTCAATCTCAGAAAATCGGGTGGACAGACTGGAACGTGTCATTTTAGCAGCGTCTAAACAATGTCAAAGGCTGCATGAAATGATCCTGAAACCTCCTGTAGAGATTGGTGATATTTTGCATCTTATTGCGCAATCAAAGCTATCTCTTATTGCAACAGCAGAAGCAGCTCCTGTTCTAAATGCATTGACATCATTGGAAAAAGAAACTAGTGGCTTAATCATAGTTGGACCAGAGGGAGATTTCACCCAGAAAGAAGTAAATATGATGATGGAGGCAGGTGCTAAAGCTGTTAATCTTGGGCCCCATCGTCTTCGAGTTGAAACTGCCACGATAGCACTTCTTGCTACTGTCATGTTATGGTCTGACTCTCAGCAAACACCAGTCTCTTGA 867 0.451 MLQTLVIPANFRFANRMFLRRSFRVRAFTSSSSDYEDQSRGGLPRFYSETLPPSKGNVIRVKGDEFWHMTKVLRLSTNDRVQLFNGKGGLVEGSIQNIDRTGVDFVALTDLKLMPAQNFQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSPSISENRVDRLERVILAASKQCQRLHEMILKPPVEIGDILHLIAQSKLSLIATAEAAPVLNALTSLEKETSGLIIVGPEGDFTQKEVNMMMEAGAKAVNLGPHRLRVETATIALLATVMLWSDSQQTPVS* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0502 288 PANTHER RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE E 43 284 IPR006700 GO:0006364|GO:0008168
Tpr1g0502 288 SUPERFAMILY PUA domain-like 45 106 IPR015947 -
Tpr1g0502 288 CDD RsmE-like 121 274 IPR046886 -
Tpr1g0502 288 Pfam RNA methyltransferase PUA domain 62 106 IPR046887 -
Tpr1g0502 288 Gene3D - 42 286 IPR029026 -
Tpr1g0502 288 SUPERFAMILY alpha/beta knot 120 280 IPR029028 -
Tpr1g0502 288 Pfam RNA methyltransferase domain 120 276 IPR046886 -
Tpr1g0502 288 TIGRFAM TIGR00046: RNA methyltransferase, RsmE family 57 277 IPR006700 GO:0006364|GO:0008168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0502 K09761 - gmx:100777253 454.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g0502 1 4219691 4223406 Tpr1g0502 1 4219691 4223406 ECH