Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0494 ATGAAGCTTGCAACAGTAGAGCTATGCATTTTCTTGTTCACCACATCTTGCTTTCTACTCCTTTCATCAGGGTTCCAATTCCATTCTATGCCTTATGATTATTCTGCTACTACAGAGTGTGTAGCAGAACCTCAGAGGGCACAGTATGGAGGAGGCATTATTGTAAATCCAGGATTTGAGCACAGCATAAAGGGTTGGACAGTGTTTGGAAATGGAACAATCGAGGAACGTATATCGAATGGTGGAAATAGGTTCGTTGTTGCAAGCAACAGAACACAAGCATTGGATAGTTTTTCACAGAAGGTCCAACTGAAGAAAGGAATGATATACATTTTTTCTGCTTGGTTTCAGCTCAGTGAAGGAAGTGACATTGTGTCGGTTGTATTTAAAAGAAATGGAAGTGAATTGGTACGAGGTGGCCATGTGATAGCCAAGCATGGATGTTGGTCACTGCTAAAAGGCGGCATAGTTGCAAACTTTTCAAGCCCTGCTGAGATTCTTTTCGAGAGCGAGAATCCAAATGTGGAATTATGGGCTGATAGTGTCTCCTTACAACCATTCACCAGAAATCAATGGAGATCACACCAAGACAACAGCATTGAGAGGGTACGTAAGAGCAGGGTGAGATTCCAGGTAACTCATCCAAACAAAACTGCATTGGAAGGAGCAACAGTTGTTATCAAACAAACAAAGGCAGATTTCCCTTTTGGATGTGCGATGAACCATTATATCCTCACAAACACCGACTACCAGAGATGGTTTGTGTCAAGATTCAAATACACTACTTTCACTAACGAGATGAAGTGGTATAGTACAGAGAAAATTCAAGGCCAGGAAAACTATACTATCCCAGATGCCATGCTGAAATTTGCCAAAGAAAATGGCATTTCTGTCAGAGGCCATAACATTTTGTGGGACAGTATAAATCGTCAGCCTCGTTGGGATTTGTCCCTGTCTCCTGACGAATTACGAGAAGCAGCTACAAAAAGAATGAATTCTGTGGTCTCAAGGTATAAGGGACAACTGATTGCATGGGACGTGGTGAATGAGAATCTCCACTTCAACTTTTTTGAGGACAAACTCGGCGAAAATGCCTCTGCAGTATATTATTCAGCAGCTTATCATCTTGATCCGAACACGAACATGTTCTTGAATGAGTATAACACCATTGAATACAGTCATGATAAGGATGCCAGCCCAGGCAATTATATCAGGAAAATTAAGCAAATTCAGCAATTTCCAGGAACTGATGGAATACCATTGGCCATAGGGTTGCAATGCCACTTTGGAAGTGGCAAGCCGAACATTGCTTACATGAGGTCAGGTCTAGATCTTCTTGCTGCAACTGGACTTCCTATATGGCTAACAGAAACCAGTATGGATCCTCAGCAAAATCAGGCAGAATACTTTGAAGAGATACTAAGAGAGGGTTACTCACATCCTGCTGTTCAAGGGATTGTAATGTTTGTGGGTCCAGAACAGGCCGGTTTCAACAGTACATTACTTGCAGATGCAAATTTTAAAAATACTCCAACTGGAGACGTTGTGGACAAGCTGATTCGTGAGTGGGGAACTGGCCCTTATACAGCCATAGCAGACAGTAGAGGAATTATAGATATTTCACTACACCATGGGGATTATGATGTGACTGTTACACATCCTCTAACCCAATACTCCAAAACACTGAATATAAATGTAAGGAAAGGATTTTCACTGGATACCATCCATGTGAAAATGCATGCCTAA 1746 0.417 MKLATVELCIFLFTTSCFLLLSSGFQFHSMPYDYSATTECVAEPQRAQYGGGIIVNPGFEHSIKGWTVFGNGTIEERISNGGNRFVVASNRTQALDSFSQKVQLKKGMIYIFSAWFQLSEGSDIVSVVFKRNGSELVRGGHVIAKHGCWSLLKGGIVANFSSPAEILFESENPNVELWADSVSLQPFTRNQWRSHQDNSIERVRKSRVRFQVTHPNKTALEGATVVIKQTKADFPFGCAMNHYILTNTDYQRWFVSRFKYTTFTNEMKWYSTEKIQGQENYTIPDAMLKFAKENGISVRGHNILWDSINRQPRWDLSLSPDELREAATKRMNSVVSRYKGQLIAWDVVNENLHFNFFEDKLGENASAVYYSAAYHLDPNTNMFLNEYNTIEYSHDKDASPGNYIRKIKQIQQFPGTDGIPLAIGLQCHFGSGKPNIAYMRSGLDLLAATGLPIWLTETSMDPQQNQAEYFEEILREGYSHPAVQGIVMFVGPEQAGFNSTLLADANFKNTPTGDVVDKLIREWGTGPYTAIADSRGIIDISLHHGDYDVTVTHPLTQYSKTLNINVRKGFSLDTIHVKMHA* 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0494 581 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 221 519 IPR001000 GO:0004553|GO:0005975
Tpr1g0494 581 PANTHER HYDROLYZING O-GLYCOSYL COMPOUNDS, PUTATIVE-RELATED 38 577 - -
Tpr1g0494 581 Pfam Carbohydrate binding domain 52 126 IPR003305 GO:0016798
Tpr1g0494 581 Gene3D Glycosidases 223 525 - -
Tpr1g0494 581 SUPERFAMILY Galactose-binding domain-like 50 185 IPR008979 -
Tpr1g0494 581 Pfam Glycosyl hydrolase family 10 230 475 IPR001000 GO:0004553|GO:0005975
Tpr1g0494 581 PANTHER GLYCOSYL HYDROLASE 38 577 IPR044846 GO:0004553|GO:0005975
Tpr1g0494 581 Gene3D - 41 187 - -
Tpr1g0494 581 SMART glyco_10 267 518 IPR001000 GO:0004553|GO:0005975
Tpr1g0494 581 SUPERFAMILY (Trans)glycosidases 220 527 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0494 Tpr-Chr1 4165048 4168199 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0494 28 566 Glycoside Hydrolase AT4G33840 53.137 0.0 591
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0494 - - mtr:MTR_1g106770 910.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g0494 1 4165048 4168199 Tpr1g0494 1 4165048 4168199 ECH