Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0493 ATGAAGGTTGCATTAGAACTATGCAATTTTTTGTTCACCACATCTTGCCTTGTACTCATTTCAGGGCTCCAACTTCATTCTATGCCTTATGATCATTTTGCTACTCCGGAGTGTTTGAAAGAACCTCGGAGGGCACAATATGGAGGTGGCATTATAGTAAATCCAGATTTTGATCACAACACAAAGGGTTGGTCAGTGTATGGAAATGGAACAATCAAGGTACGAACATCAAATGATGGAAATAACTTCATTGTTGCCAGCAACAGAACACAATCATTGGATAGTTTTTCACAGAAGGTTCAATTAAAAAAAGGAATGATGTATACTGTTTCTGGTTGGTTTCAACTCAGTAAAGGAAGTGATATTGTGGCGGCTGTATTTAAAATAAATGGAAGTGAACTGGTACGTGGTGGCTATGTTATAGCAAACCAAGGATGCTGGTCTTTTCTAAAAGGCGGCATAGTTGCGAATTTTTCAAGCTCTGCTGAGATTTTTTTTGAGAGTGACAATCCAACTGCGGAGTTATGGGCTGATAGTGTTTCCTTAAAACCATTCACAATAGAGCAATGGAGATCACACCAAGACAAAAACATTGAGAGGGTGCGTAAGAGTAAGGTGAGATTCCAGGTAACTCATCTAAACGAAACAGCATCGGAAGGAGCAACAGTCGTCATCACCCAAACAAAGCCAAATTTCCCATTTGGATGTGCGATGAATAGTCATATCCTCACAAACATTGAGTACCAGAAATGGTTTGTGGCAAGATTCAAATACACAACTTTCACAAATGAGATGAAGTGGTATAGTACAGAGAAAATTCAAGGCCAAGAAAACTATACTATCCCAGATGCCATGATGAAATTCGCCAAAGAAAATGGCATTTGTGTCAGAGGTCATTCCATTTTCTGGGACGATATGAAATTTCAGCCTCAATGGGTTAAGTCCCTACCTCCTAACGAATTACGAGAAGCAGCTGCAAAAAGAATGAACTCTGTGGTTTCAAGGTACAACGGACAACTGATTGCATGGGATGTTATGAATGAGAATATCCACTACCACTTTTATGAGGAGAAAATCGGTGTAAATGCCTCTGCAGAATATTATTCATCAGCTTACCATCTTGATCCAAAAGCTACCATGTTCGTGAATGAATATAACACCATTGAATATAGTGGAGAGACGATTGCCAGCCCAGCCAATTACATCAGGAAACTTCAGGAGATTCAGCAATTTCCGGGAACTGCTGGAATGCCACTGGCCATAGGGTTGCAAGGCCATTTTGGAAGGGGCGTCCCAAATCTTGCATACATGAGGTCAGGTCTAGATCTTCTTGGTGCAACTGGACTTCCTATATGGCTCACAGAAACCAGTGTGGAAGATCAGCCAAATCAGGCACAATACCTTGAAGATATACTGAGAGAGAGTTATTCTCATCCAGCTGTTCAAGGGATTATAATGTTTCAAGGTCCAGCACAAGCCGGTTTCGTCTATACACTCCTCGCAGACGCGAATTTTAAAAATACTCCAAGTGGAGATGTTGTGGACAAGCTAATTAATGAGTGGGGAACTGGACCTAAAACAGCCATAGCAGATAGTAGAGGAATTGTAGATATTTCATTACATCATGGAGATTATGATGTTACTGTTACACATCCTCTAATCCAATACTCCAAAAAATTGAAAATAAGTGTAAGGAAAGAATTTTCACCGGATACCATGCATGTGAAAATGCATACCTAA 1740 0.4023 MKVALELCNFLFTTSCLVLISGLQLHSMPYDHFATPECLKEPRRAQYGGGIIVNPDFDHNTKGWSVYGNGTIKVRTSNDGNNFIVASNRTQSLDSFSQKVQLKKGMMYTVSGWFQLSKGSDIVAAVFKINGSELVRGGYVIANQGCWSFLKGGIVANFSSSAEIFFESDNPTAELWADSVSLKPFTIEQWRSHQDKNIERVRKSKVRFQVTHLNETASEGATVVITQTKPNFPFGCAMNSHILTNIEYQKWFVARFKYTTFTNEMKWYSTEKIQGQENYTIPDAMMKFAKENGICVRGHSIFWDDMKFQPQWVKSLPPNELREAAAKRMNSVVSRYNGQLIAWDVMNENIHYHFYEEKIGVNASAEYYSSAYHLDPKATMFVNEYNTIEYSGETIASPANYIRKLQEIQQFPGTAGMPLAIGLQGHFGRGVPNLAYMRSGLDLLGATGLPIWLTETSVEDQPNQAQYLEDILRESYSHPAVQGIIMFQGPAQAGFVYTLLADANFKNTPSGDVVDKLINEWGTGPKTAIADSRGIVDISLHHGDYDVTVTHPLIQYSKKLKISVRKEFSPDTMHVKMHT* 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0493 579 Pfam Glycosyl hydrolase family 10 228 468 IPR001000 GO:0004553|GO:0005975
Tpr1g0493 579 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 218 517 IPR001000 GO:0004553|GO:0005975
Tpr1g0493 579 PANTHER GLYCOSYL HYDROLASE 37 575 IPR044846 GO:0004553|GO:0005975
Tpr1g0493 579 Gene3D - 39 188 - -
Tpr1g0493 579 PANTHER HYDROLYZING O-GLYCOSYL COMPOUNDS, PUTATIVE-RELATED 37 575 - -
Tpr1g0493 579 SUPERFAMILY (Trans)glycosidases 220 524 IPR017853 -
Tpr1g0493 579 SMART glyco_10 265 516 IPR001000 GO:0004553|GO:0005975
Tpr1g0493 579 Gene3D Glycosidases 221 524 - -
Tpr1g0493 579 SUPERFAMILY Galactose-binding domain-like 48 184 IPR008979 -
Tpr1g0493 579 Pfam Carbohydrate binding domain 50 168 IPR003305 GO:0016798
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0493 Tpr-Chr1 4147022 4150387 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0493 21 553 Glycoside Hydrolase AT4G33840 50.933 0.0 566
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0493 - - mtr:MTR_1g106770 875.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g0493 1 4147022 4150387 Tpr1g0493 1 4147022 4150387 ECH