Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0492 ATGCATTGTATAAGAGAAGTTTTATATAATATAATGATGATTAGTGACAAAATGAAGGTTGCTGCAAAATGTTGCAATTTATTCTTCACCACAACCTCTTTCCTTTTACTTATCTCAGGTCTAGGTGTTCATTCTTTGGATTATGATTATTCTGCAACTATTGAGTGTATGAAAGAACCTCAGAGGGCACAATATGGAGGGGGCATTATAGTAAATTCAGAATTTGAACACAACATAGAGGGTTGGACAGTGTTTGGAAATGGAAAAATTGAGGAACATATATCAAATGATGGAAATAGATTCATTGTTGTTAGAAACAGAACACAAACATTAGATAGTTTTTCACAAAATGTTCAACTCAAGAAAGGATTGATTTACATGTTTTCAGCTTGGTTTCAGCTCAGTGAAGGAAGTGATATTGTGTCAGTTTTATTTAAAATAAATGGAAGTGAACTGGTACGAGGTGGTCATGTTATAGCAAAGCAGGGATGTTGGTCTCTTCTAAAGGGTGGCATAGTTGCAAATTTTTCAAGCTCTGCTGAGATTCTTTTTGAGAGTGAGAATCCAACTGTGGAGTTATGGGCTGATAGTGTTTCCTTACAACCATTCACCATAAAGCAATGGAGATCACACCAAGACAAGAGCATTGAGCGGGTGCGTAAGAGTAAGGTGAGATTCCAGGTAACTCATCTAAACGAAACAGCATTGGAAGGAGCAACAGTCGTCATCAAACAAACAAAGCCAAATTTTCCATTCGGATGTGCAATGAATAAGTATATCCTCACAAACTATGAGTACCAGAAATGGTTTGTGGCAAGATTCAAATACACAACTTTCACTAACGAGATGAAGTGGTATAGTACAGAGCAAATTCAAGGCCAGGAAAACTATACTATAGCAGATGCCATGTTGAAATTCGCCAAAGAAAATGGCATATCTGTCAGAGGTCATACCATTTTTTGGGACTGTACAAATTTACAGCCTGGATGGGTTAAGTTCCTATCTCCTAACGAATTACGAGAAGCAGCAGCAAAAAGAATGAATTCGGTGGTTTCAAGGTATAACGGACAACTGATTGCATGGGATGTTGTGAATGAGAATCTCCACTGCCACTTTTATGAGGACAAATTCGGTGAAAATATCTCTGCAAAATATTATTCAACAGCTTACCATCTTGATCCAAAAACTACCATGTTCATGAATGAGTATAACACAATTGAATACAGTGGAGATCATTTTGCTAGCCCAGCCAATTACATCAGGAAACTTAAGGAGATTTGGAAATTTCCAGGAACTGCTGGAATGCCAATGGGCATAGGGGTGCAAGGCCATTTTGCATGGGGCGTCCCAAATCTTGCTTACATGAGGTCAGGTCTAGATCTTCTTGGTGCAACTGGACTTCCTATATGGCTCACTGAAACCAGTGTGAAAGCTCAGCCAAATCAGGCACAATACTTAGAAGAGATACTAAGAGAGGCATTCTCTCATCCAGCTGTTCAAGGGATTATAATGTTTGTAGGTCCAGCACAAGCCGGTTTCCGCGGTACAGTCCTCGCAGATGCAAAATTTCAAAATACTCCAAGTGGAGATGTTGTGGACAAGCTAATTAATGAGTGGGGAACTGGACCTAAAATAGCCATAGCAGATAGTAAAGGAATTGTAGACATTTCATTACATCATGGAGATTATGATGTTACTGTTACACATCCTCTAACCCAATACTCCAAAAAATTGAATGTAAGTGTGAGGAAAGGATTTTCACCCGATACCATTCATGTGAAAATGCATGCCTAA 1794 0.3868 MHCIREVLYNIMMISDKMKVAAKCCNLFFTTTSFLLLISGLGVHSLDYDYSATIECMKEPQRAQYGGGIIVNSEFEHNIEGWTVFGNGKIEEHISNDGNRFIVVRNRTQTLDSFSQNVQLKKGLIYMFSAWFQLSEGSDIVSVLFKINGSELVRGGHVIAKQGCWSLLKGGIVANFSSSAEILFESENPTVELWADSVSLQPFTIKQWRSHQDKSIERVRKSKVRFQVTHLNETALEGATVVIKQTKPNFPFGCAMNKYILTNYEYQKWFVARFKYTTFTNEMKWYSTEQIQGQENYTIADAMLKFAKENGISVRGHTIFWDCTNLQPGWVKFLSPNELREAAAKRMNSVVSRYNGQLIAWDVVNENLHCHFYEDKFGENISAKYYSTAYHLDPKTTMFMNEYNTIEYSGDHFASPANYIRKLKEIWKFPGTAGMPMGIGVQGHFAWGVPNLAYMRSGLDLLGATGLPIWLTETSVKAQPNQAQYLEEILREAFSHPAVQGIIMFVGPAQAGFRGTVLADAKFQNTPSGDVVDKLINEWGTGPKIAIADSKGIVDISLHHGDYDVTVTHPLTQYSKKLNVSVRKGFSPDTIHVKMHA* 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0492 597 SMART glyco_10 283 535 IPR001000 GO:0004553|GO:0005975
Tpr1g0492 597 Pfam Carbohydrate binding domain 68 150 IPR003305 GO:0016798
Tpr1g0492 597 PANTHER HYDROLYZING O-GLYCOSYL COMPOUNDS, PUTATIVE-RELATED 54 593 - -
Tpr1g0492 597 SUPERFAMILY (Trans)glycosidases 236 542 IPR017853 -
Tpr1g0492 597 Pfam Glycosyl hydrolase family 10 246 486 IPR001000 GO:0004553|GO:0005975
Tpr1g0492 597 Gene3D - 57 203 - -
Tpr1g0492 597 SUPERFAMILY Galactose-binding domain-like 66 201 IPR008979 -
Tpr1g0492 597 Gene3D Glycosidases 239 542 - -
Tpr1g0492 597 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 237 535 IPR001000 GO:0004553|GO:0005975
Tpr1g0492 597 PANTHER GLYCOSYL HYDROLASE 54 593 IPR044846 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0492 Tpr-Chr1 4143775 4162681 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0492 44 582 Glycoside Hydrolase AT4G33840 50.185 0.0 563
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0492 - - mtr:MTR_1g106770 895.575
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g0492 1 4143775 4162681 Tpr1g0492 1 4143775 4162681 ECH