Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0483 ATGTCCTCTTCTCTCTCACCACCATCACTCTCTTCTCCTTTCATCCACGGTTCTTCAACTTATCGCCATGGAACCAAACTTTTTCTTCTTCCTCACTCTACCTCCACACGCAAACCTCGATGCTTCAGATCTTTCTCTTCAAAGTGCTCTCTCGACAACGTCCCCAAACAGTTCAGAGAGGAAAATCTCAAAGATGGAATGATGGACAACTACAAGAATGCACCCAAGTTTCTGTACGGTCTTACTCCTTCACAAATGAATATGTTCATAAATCCAGAAAATCCTATGAACAAGATGTCTGAAAGAGTTACAAAGGAAAGCATTTCATCTGCCAGCAGTTATTTGGCGAATAGTAGTATATCTAGCATGGATAAACGTGGCTCTTCAAAGTACAGCATGGGTGCTAGTATGTTGTATAGAGGAGGACGTAGGGGGGGAAGGGCTAGAAGAGCTCCACCAGATTTGCCTTCTGTGCTCTTGGATGCTCGAATATGTTTTCTGGGTATGGCGATGAAACCAGAGGTGACAGAACTTATTGTGGCTCAACTTATGTGGTTGGATTATGATGACCCTTCCAAACCTATTTATTTATATATTAATTCGCCTGGGACTCAGGATGAGAAGAGGAATATTGTGGGAGCAGAAACTAATGCTTATGCCATAGCTGATATGATGTTTCGTGTCAAAGCTGATATCTATACCATCAATTTGGCAATGGCGTATGGCCAAGCAGCAATGCTTTTGTCTCTCGGAAAAAAGGGTAAACGTGCCATACTGCCAAATGCATCCACAAAAGTATATCTCCCGAAATGCGACAAATCATTTGGTTCTGTTGGAGATATGTGGATTAAGGCAAAAGAGCTGGAGACAAGTTCCAAGCATTACATTGATTTGCTGTCATATGGAATGGGGAAACCAAGGAAGGAAGTTGCTAAAGAAATCCAGAAGTCTAGATTTTTCCTAGCACAGGAAGCCGTAGACTTCGGAATCGCGGACAAAGTAATGGACTTCGGGGAAAATGCATTTGAGAAGCGGGATTATAATGCAATGCGTGCTGAAAGAGCACTCCAGAGAGGTGGTGGGAACCTTCAAGCGTCTCCTGCAGGATTTTAG 1113 0.4304 MSSSLSPPSLSSPFIHGSSTYRHGTKLFLLPHSTSTRKPRCFRSFSSKCSLDNVPKQFREENLKDGMMDNYKNAPKFLYGLTPSQMNMFINPENPMNKMSERVTKESISSASSYLANSSISSMDKRGSSKYSMGASMLYRGGRRGGRARRAPPDLPSVLLDARICFLGMAMKPEVTELIVAQLMWLDYDDPSKPIYLYINSPGTQDEKRNIVGAETNAYAIADMMFRVKADIYTINLAMAYGQAAMLLSLGKKGKRAILPNASTKVYLPKCDKSFGSVGDMWIKAKELETSSKHYIDLLSYGMGKPRKEVAKEIQKSRFFLAQEAVDFGIADKVMDFGENAFEKRDYNAMRAERALQRGGGNLQASPAGF* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0483 370 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT-RELATED PROTEIN 1, CHLOROPLASTIC 44 359 - -
Tpr1g0483 370 SUPERFAMILY ClpP/crotonase 151 338 IPR029045 -
Tpr1g0483 370 CDD S14_ClpP_2 154 334 IPR001907 GO:0004176|GO:0004252|GO:0006508
Tpr1g0483 370 PRINTS Clp protease catalytic subunit P signature 154 169 IPR001907 GO:0004176|GO:0004252|GO:0006508
Tpr1g0483 370 PRINTS Clp protease catalytic subunit P signature 194 214 IPR001907 GO:0004176|GO:0004252|GO:0006508
Tpr1g0483 370 PRINTS Clp protease catalytic subunit P signature 234 251 IPR001907 GO:0004176|GO:0004252|GO:0006508
Tpr1g0483 370 PRINTS Clp protease catalytic subunit P signature 255 274 IPR001907 GO:0004176|GO:0004252|GO:0006508
Tpr1g0483 370 PRINTS Clp protease catalytic subunit P signature 313 332 IPR001907 GO:0004176|GO:0004252|GO:0006508
Tpr1g0483 370 Pfam Clp protease 155 336 IPR023562 -
Tpr1g0483 370 Gene3D - 133 338 - -
Tpr1g0483 370 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 44 359 IPR023562 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0483 Tpr-Chr1 4078157 4081626 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0483 K01358 - gmx:100820008 428.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g0483 1 4078157 4081626 Tpr1g0483 1 4078157 4081626 ECH