Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0479 ATGAAGTTTATGAAACTTGGTTCCAAGCCAGATACCTTTCAGACTGATGCCAACAACAATGTTAGGTATGTGGCTGGTGATTTGGCATCAGATATCGTTGTTAGCATAGGGGATATGAAGTTTTACTTACACAAGTTTCCTCTCATATCGAAGAGTTCTCACTTACAGAAGTTGATCTCCCTCAATAACGAAGAAAACATAGATGAAATTCAAATTTCCGACATTCCTGGTGGTGCAAGTGCCTTTGAGATATGTGCTAAGTTTTGCTATGGCATGACTGTTACCCTTAATGCTTACAATGTGATTGCCACTAGATGTGCAGCAGAGTATCTTGGAATGCATGAAAACATCGAGAAAGGAAACCTTCTTTACAAGATCGATGTTTTCCTTAACTCTAGCATTTTTCGTAGTTGGAAGGATTCAATCATCATTCTTCAGACTACAAAGTCCATGTTACCCTTGGACGAGGAGCAAAAGGTTGTTACTCGTTGCATTGAATCTATAGCAAACAAGGCGTCTGTTGATGTGTCCAAAGTTGATTGGTCTTATTCGTATAACAGAAAAAAGCTTCCGGAGGAAAATGGGATTGAGTCAAACCAAAATGGAGTCAGAACTCGACATGTGCCAAAAGACTGGTGGGTTGAAGATTTATCTGAGCTTGAAGTTGACATGTATGAATCTGTGATTAAAAATATCATAACCAAGGAAATTCAAACTAATGATGTAATTGGCGAAGCCTTGAAAGCTTATGCTTACAGAAAGTTGCCAAATTTCAGCAAGGGTATGGTCCCATGTGGGGATGTGTCGAAGCATCGGTTGATAGTTGAAACTATTGTGAAGTTGTTGCCTTCTGAGAAAGGCAGTGTTTCGTGTCGGTTCTTAGTCAAGTTATTGAAAGCTGCAATTTTTGTAGAATCAGAAGATAGGATTAAAGAAGAGCTAGTAAAGAGAATTGGCCAGCAACTGGAGGAGGCTTCGGTAAATGATATTTTGATTCGAGCACCAGATGGTGAGACTACAATGTATGATGTCGGTATAGTACAAAACATTGTAAGGGAGTTTCTTATGAAAGATCATAATTCTGAGATTCAATCGGTTGAAGGTGGTGAACTTGAGGGGATTCTTAAGCCAGGAATATTATCAGATGCTTCTAAGCTGATGGTTGCAAAACTCATAGATAGTTACCTTGCTGAAATCGCAAAGGATCCTAATTTACCATTGTCAGATTTCGTTAATCTTGCTGAGTTGGTCTCAAACATCTCTCGTCCTGCTCACGATGGCATTTACAGGGCTATTGACACATATTTGAAGGAGCACCCTGGGATTAACAAAGGCGAAAAGAAGCGAATATGCAAGTTGATGGATTGCAGAAAGCTATCAGTTGATGCATGTTTGCATGCAATACAAAACGAGAGGCTGCCGTCACGTGTAGTTGTGCAGGTACTATATTTCGAGCAAGTCAGAACCGCTGCATCATCAGGTACTAGCACTCCAGACATAATAACTAAAGGAATCAAAGACTTGAGCATTGGATCCAATGGTAGCTCAAGGTCCGGGACAACTAATCCAGAAGACGACACAGACGGTTCAGCAACAGCCGAGGAACTAAAGGCATTAAGAAAGGAACTTGCGTCGTTGAGACTAAGTAACGGAGTTGGAAACAGTTTCAAAGACGGAGATGCTAAACCAAAAATGGATAAGGCTGTTATTGGGAAGATGAAAGGGTTGTTGAAGTCAAAGAAGTCTTTCATTAAGCTATGGGCAAGCAAAGGTGGACATGGTGAAAATAGTGGTTCGGATTCATCCGAGAGTATTGGTTCTGCTAACCCTGAAGAAGTTAAATCTACACCATCAAGAAATAGGAGGCATTCAGTTTCCTAA 1881 0.404 MKFMKLGSKPDTFQTDANNNVRYVAGDLASDIVVSIGDMKFYLHKFPLISKSSHLQKLISLNNEENIDEIQISDIPGGASAFEICAKFCYGMTVTLNAYNVIATRCAAEYLGMHENIEKGNLLYKIDVFLNSSIFRSWKDSIIILQTTKSMLPLDEEQKVVTRCIESIANKASVDVSKVDWSYSYNRKKLPEENGIESNQNGVRTRHVPKDWWVEDLSELEVDMYESVIKNIITKEIQTNDVIGEALKAYAYRKLPNFSKGMVPCGDVSKHRLIVETIVKLLPSEKGSVSCRFLVKLLKAAIFVESEDRIKEELVKRIGQQLEEASVNDILIRAPDGETTMYDVGIVQNIVREFLMKDHNSEIQSVEGGELEGILKPGILSDASKLMVAKLIDSYLAEIAKDPNLPLSDFVNLAELVSNISRPAHDGIYRAIDTYLKEHPGINKGEKKRICKLMDCRKLSVDACLHAIQNERLPSRVVVQVLYFEQVRTAASSGTSTPDIITKGIKDLSIGSNGSSRSGTTNPEDDTDGSATAEELKALRKELASLRLSNGVGNSFKDGDAKPKMDKAVIGKMKGLLKSKKSFIKLWASKGGHGENSGSDSSESIGSANPEEVKSTPSRNRRHSVS* 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0479 626 Gene3D Potassium Channel Kv1.1; Chain A 15 121 IPR011333 -
Tpr1g0479 626 ProSiteProfiles BTB domain profile. 30 98 IPR000210 GO:0005515
Tpr1g0479 626 ProSiteProfiles NPH3 domain profile. 211 488 IPR027356 -
Tpr1g0479 626 MobiDBLite consensus disorder prediction 511 530 - -
Tpr1g0479 626 Pfam BTB/POZ domain 29 117 IPR000210 GO:0005515
Tpr1g0479 626 MobiDBLite consensus disorder prediction 594 614 - -
Tpr1g0479 626 PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN NPY2 1 623 IPR029960 GO:0009958
Tpr1g0479 626 Pfam NPH3 family 211 464 IPR027356 -
Tpr1g0479 626 SMART BTB_4 30 128 IPR000210 GO:0005515
Tpr1g0479 626 PANTHER OS12G0117600 PROTEIN 1 623 IPR043454 -
Tpr1g0479 626 MobiDBLite consensus disorder prediction 590 626 - -
Tpr1g0479 626 MobiDBLite consensus disorder prediction 511 527 - -
Tpr1g0479 626 SUPERFAMILY POZ domain 22 116 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0479 Tpr-Chr1 4036470 4041308 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0479 8 514 EF-hand Containing Proteins AT3G44820 34.317 3.14e-98 312
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0479 - - gmx:100818944 1030.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g0479 1 4036470 4041308 Tpr1g0479 1 4036470 4041308 ECH