Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0206 ATGGAAGTTCAACAGCATGATACACTTTCTGAAAACAATGAGGCCGAGCCCGATGGAGTTTCTTGTAAGAAAAGTAATGCCGTGCAAATTTATAGACAAGATGTTGTGAAGAATAAAAACGGTGGGATGATTGGGATTGTGACGGAAGTTAATGGTGATTCAGATTCGGATTCAGATAGCGAAGTATCTGATGATGAGGATGATAGTGAGGATGAGGATGGTGATGTTGAAGAAGGTGATGAAAGTAATAATGGTTGTAGAAATTCTGATAGGAATGATGCTTCTGTGCATGGTAAAACTGCTGCTCTTCAGACTAACGAGCTACGTGTACTCTGGATGGATGAATCTGAATCCACACAGACTTTCGGCGACGTCGAGGTTATTGATCGTGGATTCTTACATGGTGATTTTGTAGCTGCTGCCTCTGATCCTACTGGGCAAGTGGGTGTTGTGGTTGATGTCAATATGTCTGTGGATTTGTTGGCCCATGATGGATCTATTGTAAAAGAGGTCTCATCAAAAGCCTTACAGCGTATTAGGGATTTCACTGTTGGTGATTATGTGGTGCTCGGGTCTTGGCTAGGAAGAGTTGATGAGGTTTTGGATAATGTGACTGTTTTATTCGATGATGGTTCAGTTTGTAAAGTCTCCAAAGCAGATCCAATGAATCTTAAACCGATTTCAAAGAATATTCTTGAAGATGGGCATTTCCCTTATTACCCAGGGCAACGTGTAAGGGCCAAGTCTTCATCAATCTTCAAGATGGCTAGGTGGTTGTCTGGCCTGTGGAAAGCAAATAGGTTAGAAGGTACTGTCACCAATGTTACAGTTGGATCAGTGTTCGTTTATTGGATAGCATCTGCAGGTTATGGACCATATTCTTCTACTTCCCCAGCTGAGGAACAGAGTCCGAAAAACTTAAAATTGTTGTCTTGTTTTGCTCATGCAAATTGGCAATTGGGTGACTGGTGTCTTTTACCCTCATCTGCACTGTCATCTTCTGTTTCCATCAACAAGAGCAAATCAAAATTGGAACGCAACAATTCTGTTAATATTGAATTAGATTCTAATCAAACAGGGAGTGGGTGTGAATCAGAAGACGCTACAGTTGAGGAATCAAATGGGAATAAGGATGCTATGGACCTTGATCCGGTGGGTGCTTTGGAAGGGAACGATGGAAATGATAGAAAGAATCCTTCACGCGAATCTAGCTCATGTGGTAGTTCTATCTCAGTATCAAAGGACCCTGTCCATGAAGCCTGGCCTCTTCACCGCAAGAAAATAAGGAAAGTTGTCATCAGGAAAGAAAAGAGAGCTCGGAAGAAAGATGAAAGCTTTGAAAAAGCTCTTCTAATTTCCAACACCAGGACAAGAGTTGATGTTGCTTGGCAGGATGGAACAATAGAGCGTGAACTATATTCTACGAGTTTAATTCCTATTGATAATCCTGGTGATCATGAATTTGTTTCAGAACAGTATGTTGTGGAGAAGACCTCTGATGTTGGTGAGGATAATTGTGAAACTAGCCGAGTTGGGGTGGTGAGGAGTGTTAATGCCAAAGAGCGGACAGCTTGTGTGAGGTGGATAAAACCAGCTGCCAGGGCAGATGATCCCCGAGAATTTGACAAGGAGGAAATTGTTAGTGTCTATGAGCTAGAGGGCCATCCAGATTATGATTACTGCCACGGGGACGTGGTTGTTAGACTATCACCTGTGACTGTCTCTTCAGAAGCTTCTGTTGGAGAGTCCATTGAGAAATCGAAGCAGGAAAATGAAGAAAGGGGACTTAAAAAGGAAGCTGGAACCCAAACAGAAAATGCATCTGCTGGCGAAAGGGATGTGGAGTTCTCAGACCTCTCTTGGGTTGGAAATATAACTGGCCTTAAGAATGGTGATATTGAAGTTACTTGGGCTGATGGGATGGTATCAACGGTTGGGCCCCAAGCAATCTATGTGGTTGATAGAGATGATGATGATGAATCAGTTGCTGCAGGGAGCGATATAAGTGATGCTGCAAGCTGGGAAACCGTTAATGATGATGAAATGGAAGTCCTAGAGCATTCCAAAGAGGATGTTAATATGGAAAATTCAAGCGATGTTACTTCTGAGGCAGAAGATGGAGAGAAAGACTTTGGTCGGACCACAGCACTTTCTGTCCCGCTAGCGGCCCTTCGATTCGTCACCAGACTTGCCTCTGGAATATTCTCCAGGGGACAAAAGAACTTAGATCCTGTTCACACACAGTCAAATGATGAAATTATATGTCCATCACCGGTTAATGTATGTGAGTCCAGTTCTCAGGAATGTATTGTCATTGATGGTGACAATTCAGGCAGCAACAGTCGTAAAAGTGAGGAAGCTATTATTCCAGAAGGATCTGAAAATGTGGAAGTAGCTGAGACGCCGTGCAGCTTGAAAAATGGAGAGGCCCCTGCAAGTTGCGACAATGATGCTTGCAGTTTGAAACATTTTGACATGGTTACAGATCCGTCAGACCATTATTATATTGGTGCAAATGGACAGAGAAACAACCGAAAATGGTTTAAGAAGGTGCAACAAGATTGGAGCATACTACAAAATAACCTTCCTGATGAAATCTTTGTACGGGTCTATGAAGATAGAATGGATCTTTTGAGAGCAGTTATTGTAGGGCCATTTGGGACCCCTTACCAAGATGGACTGTTTTTCTTTGATTTTCACCTTCCACCAGAGTATCCTGATGTTCCGCCGTCAGCGTACTATCATTCAGGTGGTTGGCGTATTAACCCTAATTTATACGAGGAAGGGAAAGTTTGCCTTAGCCTTCTTAATACATGGACAGGCAGAGGAAATGAAGTATGGGATCCAAAATCATCTAGCATCCTTCAAGTTCTAGTTTCACTACAAGGACTAGTACTCAACTCCAAGCCTTACTTCAATGAAGCTGGATATGATAAGCAAACTGGAACAGCTGAAGGAGAGAAGAATTCATTGTCATACAATGAGAATACATTTTTACTGAACTGCAAGACCATGATGTATCTTATGCGGAAGCCCCCTAAGGATTTCGAAGTGCTCATCAAAGATCACTTTAAGAGACGTGGTCATTACATCCTTAAGGCTTGCGATGCATATATGAAAGGTTACTTGATTGGCTCGTTGAACAGAGATGCCTCCGTGAGTAATAATAGCAGTCCAAATTCTACATCTGTTGGTTTCAAGTTGATGTTAGGCAAGATAATGCCAAAGCTTTTCTTGTCACTGAGTGAGGTTGGAGCTGATTGTGAGGAATTCAAGCATTTGAAAGAGCTGTAG 3294 0.4238 MEVQQHDTLSENNEAEPDGVSCKKSNAVQIYRQDVVKNKNGGMIGIVTEVNGDSDSDSDSEVSDDEDDSEDEDGDVEEGDESNNGCRNSDRNDASVHGKTAALQTNELRVLWMDESESTQTFGDVEVIDRGFLHGDFVAAASDPTGQVGVVVDVNMSVDLLAHDGSIVKEVSSKALQRIRDFTVGDYVVLGSWLGRVDEVLDNVTVLFDDGSVCKVSKADPMNLKPISKNILEDGHFPYYPGQRVRAKSSSIFKMARWLSGLWKANRLEGTVTNVTVGSVFVYWIASAGYGPYSSTSPAEEQSPKNLKLLSCFAHANWQLGDWCLLPSSALSSSVSINKSKSKLERNNSVNIELDSNQTGSGCESEDATVEESNGNKDAMDLDPVGALEGNDGNDRKNPSRESSSCGSSISVSKDPVHEAWPLHRKKIRKVVIRKEKRARKKDESFEKALLISNTRTRVDVAWQDGTIERELYSTSLIPIDNPGDHEFVSEQYVVEKTSDVGEDNCETSRVGVVRSVNAKERTACVRWIKPAARADDPREFDKEEIVSVYELEGHPDYDYCHGDVVVRLSPVTVSSEASVGESIEKSKQENEERGLKKEAGTQTENASAGERDVEFSDLSWVGNITGLKNGDIEVTWADGMVSTVGPQAIYVVDRDDDDESVAAGSDISDAASWETVNDDEMEVLEHSKEDVNMENSSDVTSEAEDGEKDFGRTTALSVPLAALRFVTRLASGIFSRGQKNLDPVHTQSNDEIICPSPVNVCESSSQECIVIDGDNSGSNSRKSEEAIIPEGSENVEVAETPCSLKNGEAPASCDNDACSLKHFDMVTDPSDHYYIGANGQRNNRKWFKKVQQDWSILQNNLPDEIFVRVYEDRMDLLRAVIVGPFGTPYQDGLFFFDFHLPPEYPDVPPSAYYHSGGWRINPNLYEEGKVCLSLLNTWTGRGNEVWDPKSSSILQVLVSLQGLVLNSKPYFNEAGYDKQTGTAEGEKNSLSYNENTFLLNCKTMMYLMRKPPKDFEVLIKDHFKRRGHYILKACDAYMKGYLIGSLNRDASVSNNSSPNSTSVGFKLMLGKIMPKLFLSLSEVGADCEEFKHLKEL* 1098
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0206 1097 CDD UBCc 849 999 IPR000608 -
Tpr1g0206 1097 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 2 1095 - -
Tpr1g0206 1097 SMART ubc_7 849 1006 - -
Tpr1g0206 1097 Gene3D Ubiquitin Conjugating Enzyme 815 1075 IPR016135 -
Tpr1g0206 1097 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 23-RELATED 2 1095 - -
Tpr1g0206 1097 Pfam Ubiquitin-conjugating enzyme 851 994 IPR000608 -
Tpr1g0206 1097 MobiDBLite consensus disorder prediction 54 79 - -
Tpr1g0206 1097 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 846 1006 IPR000608 -
Tpr1g0206 1097 SUPERFAMILY UBC-like 828 1013 IPR016135 -
Tpr1g0206 1097 MobiDBLite consensus disorder prediction 578 612 - -
Tpr1g0206 1097 MobiDBLite consensus disorder prediction 690 709 - -
Tpr1g0206 1097 MobiDBLite consensus disorder prediction 1 26 - -
Tpr1g0206 1097 MobiDBLite consensus disorder prediction 583 600 - -
Tpr1g0206 1097 MobiDBLite consensus disorder prediction 41 99 - -
Tpr1g0206 1097 MobiDBLite consensus disorder prediction 348 369 - -
Tpr1g0206 1097 MobiDBLite consensus disorder prediction 348 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0206 Tpr-Chr1 1689855 1696957 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0206 128 330 Miscellaneous Gene Families AT2G33770 43.137 4.55e-50 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0206 K10581 - gmx:100799332 1668.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g0206 1 1689855 1696957 Tpr1g0206 1 1689855 1696957 ECH