Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc646g00002 ATGCCAGCGGTTTCAAACATGAGGGTAATTCTCTGCTGCTGCTTCTTCTTCTTCTCGGTTTTTCTTTTGGGGGCGTCGGTGGCCGCTGTGAACCCGTCTCTGAACGACGACGTTTTGGGGTTAATTGTGTTCAAAGCTGACATACAAGATCCGAAGGGAAAGCTTTCATCTTGGAACGAAGACGATGATAACGCGTGTGGAGGTGGTTGGGTTGGTGTGAGGTGCAACCCCAGATCCAACAGGGTCGTTGAACTCAACCTGGATGGTTTCTCTCTTTCTGGGAAGGTTGGTCGAGGTTTGTTGAGGTTGCAGTTCCTAAGGAAGCTTTCACTCGCCAATAACAACCTCACTGGTGGAATTAGCGCCAACATTGCTCACTTTGAAAATCTTAGAGTCATTGATTTGAGTGATAACAATCTCTCAGGAGAACTTCCTGATGATTTGTTCCGACAATGTGGGTCCCTCAGGGCTGTTTCCTTTGCTAGGAATAGGTTCTCTGGGAAGCTTCCTTCTAGTTTGGGCTCTTGTTCTGCTGTTGCTTCCATTGACATGTCTTCTAACCAGTTTTCTGGTTCCGTTCCTTCTGGGGTTTGGAGTTTGAGTGCACTCAGGTCTATTGATTTGTCAGGGAACTTGTTGGAGGGTGAGATTCCAAAAGGGGTTGATGCTTTGAAGAATTTGAGAAGTATTAGCTTATCAAACAATCAGATTTCAGGGAAGATTCCGGATGGTTTCGGAAGCTGCTCGCTCTTGAGGTCTGTTGATTTTGGTGAGAACTCACTTTCCGGTAACCTGCCGGGGGATTTGAAGGATCTAAAATTGTGTAGTTACCTTGGTTTGCGTGGAAATGCTCTCTCAGGAGTGGTTCCTGAGTGGATTGGAGATATGAGAAGCCTTGAGACATTAGACCTCTCGCGGAATAGGTTTTCCGGCCAGGTGCCGAGTTCCATTGGAGCTCTTCAATCATTGAAGATGCTGAATTTGTCTGGTAATGGCTTCACAGATAACCTGCCTGAGTCTATGTCAAATTGCACAAACCTATTGGCCTTGGATGTTAGCCATAATTCCATGTCTGGTGCTCTTCCATCTTGGATCTTTAAGTCAGATTTGGAGAAGGTTCTGGTATCTGAAAACAAGGCACGTGGTGGCTTGAAAACTCCTTTGTTTGCCTTGGCTGAAGTTGCAGTTCAAAGTCTTCAAGTTTTGGATTTTTCTGATAACACATTTTCTGGTGAGATTACATCTGCTATTGGAGGTTTAAGCAGCTTGCAGTTTCTGAATTTATCACGAAACTCCCTTAGAGGTCCTATACCTGCTGCAATTGGTGAATTGAAAATGTTGTCTATTCTTGACCTGAGTGGTAATCACCTGAATGGAAGCATACCTTGGGAAATAGCTGGAGCCATGTCCTTGAAGGAGCTGAGATTGGAAAAGAATTTTCTGGTTGGGAAAATACCGACCTCCATTGAGAACTGCTCTTCTTTATCAACTTTGATCCTGGCGCAGAACCGATTGAGTGGTTCAATACCTGCAGCAGTTGCAAAACTAACCAACCTACAAACTGTTGACTTATCATTTAACAACCTTACCGGAAGCCTTCCCAAGCAATTGGCCAACCTTGCCAATCTAATTTCCTTCAATTTATCTCACAACAATCTCCAAGGAGAACTGCCAGCCGGTGGTTTCTTCAACACCATTTCGCCTTACTCTGTTTCTGGAAATCCATCTCTTTGTGGCTCTGCTGTGAACAGATCATGCCCTGCTGTCATGCCCAAGCCTATTGTTCTAAATCCCAACACTTCAATTGACACTGGCTCGGGTACACTACCACAAACTATGGGACACAAAAGAATCATTCTCAGCATTTCTGCACTCATTGCCATTGGTGCAGCTGCTGTCATTGTAGTTGGTGTCATTGGCATCACAGTTTTGAATCTCCGAGTTCGGGCTACTGCGTCTCGATCTCCAGCCCACCTCACATTTTCTGCTGGGGATGAATTCAGCCATTCCCCAACCACAGATGCCAACTCTGGCAAACTTGTCATGTTTTCAGGCGAGCCTGATTTCAGCTCTGGAGCACATGATGCCTTGCTTAATAAGGATTGTGAGCTTGGACGTGGAGGGTTTGGAGCTGTATACCAGACAGTTCTTAGAGACGGACGATCAGTCGCCATAAAGAAGCTCACTGTATCCAGCCTTGTCAAGTCTCAAGAAGATTTTGAAAGAGAAGTGAAGAAATTAGGAAAAGTGAGACACCAAAATCTGGTGGAACTAGAAGGTTATTATTGGACTCCATCCCTTCAGCTCCTTATATCTGAGTATGTCTCCGGTGGCAGTCTCTACAAGCATCTCCATGAAGGATCAGGTGGAAACTTTCTCTCATGGAATGAAAGGTTCAATGTGATTCTTGGGACAGCAAAGGCCTTAGCTCACTTGCACAACTCAAACATTATTCACTATAACATTAAGTCAACCAACGTCCTTCTTGACAGTTATGGCGAACCAAAAGTAGGGGATTTTGGTCTAGCAAGGCTGCTACCAATGCTTGACCGGTATGTTCTCAGCAGCAAAATTCAAAGTGCCCTTGGCTACATGGCACCTGAGTTTGCTTGCAAGACAGTGAAAATTACCGAAAAATGTGATATTTATGGGTTTGGAGTCTTGGTCTTGGAGGTTGTTACAGGGAAGAGGCCTGTTGAATACATGGAGGATGATGTGGTGGTACTCTGTGACATGGTGAGAGGCGCATTGGAAGAAGGCAGGGTGGAGGAATGCATCGACGAAAGGCTACAAGGCAAGTTCCCTGCTGAGGAAGCAATTCCGGTGATGAAGTTAGGCTTAATATGTACCTCACAAGTGCCATCTAATAGGCCTGATATGGGAGAGGTTGTTAGCATACTGGAGCTGATAAAGTGCCCCTCGGAAGATCAAGAGGAGTTGGTATAA 2946 0.4525 MPAVSNMRVILCCCFFFFSVFLLGASVAAVNPSLNDDVLGLIVFKADIQDPKGKLSSWNEDDDNACGGGWVGVRCNPRSNRVVELNLDGFSLSGKVGRGLLRLQFLRKLSLANNNLTGGISANIAHFENLRVIDLSDNNLSGELPDDLFRQCGSLRAVSFARNRFSGKLPSSLGSCSAVASIDMSSNQFSGSVPSGVWSLSALRSIDLSGNLLEGEIPKGVDALKNLRSISLSNNQISGKIPDGFGSCSLLRSVDFGENSLSGNLPGDLKDLKLCSYLGLRGNALSGVVPEWIGDMRSLETLDLSRNRFSGQVPSSIGALQSLKMLNLSGNGFTDNLPESMSNCTNLLALDVSHNSMSGALPSWIFKSDLEKVLVSENKARGGLKTPLFALAEVAVQSLQVLDFSDNTFSGEITSAIGGLSSLQFLNLSRNSLRGPIPAAIGELKMLSILDLSGNHLNGSIPWEIAGAMSLKELRLEKNFLVGKIPTSIENCSSLSTLILAQNRLSGSIPAAVAKLTNLQTVDLSFNNLTGSLPKQLANLANLISFNLSHNNLQGELPAGGFFNTISPYSVSGNPSLCGSAVNRSCPAVMPKPIVLNPNTSIDTGSGTLPQTMGHKRIILSISALIAIGAAAVIVVGVIGITVLNLRVRATASRSPAHLTFSAGDEFSHSPTTDANSGKLVMFSGEPDFSSGAHDALLNKDCELGRGGFGAVYQTVLRDGRSVAIKKLTVSSLVKSQEDFEREVKKLGKVRHQNLVELEGYYWTPSLQLLISEYVSGGSLYKHLHEGSGGNFLSWNERFNVILGTAKALAHLHNSNIIHYNIKSTNVLLDSYGEPKVGDFGLARLLPMLDRYVLSSKIQSALGYMAPEFACKTVKITEKCDIYGFGVLVLEVVTGKRPVEYMEDDVVVLCDMVRGALEEGRVEECIDERLQGKFPAEEAIPVMKLGLICTSQVPSNRPDMGEVVSILELIKCPSEDQEELV 981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc646g00002 981 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 396 968 - -
Stsc646g00002 981 SUPERFAMILY Protein kinase-like (PK-like) 702 971 IPR011009 -
Stsc646g00002 981 Pfam Leucine rich repeat 470 529 IPR001611 GO:0005515
Stsc646g00002 981 Pfam Leucine rich repeat 277 332 IPR001611 GO:0005515
Stsc646g00002 981 Pfam Leucine rich repeat 398 457 IPR001611 GO:0005515
Stsc646g00002 981 SUPERFAMILY RNI-like 181 558 - -
Stsc646g00002 981 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 35 315 - -
Stsc646g00002 981 SUPERFAMILY L domain-like 34 218 - -
Stsc646g00002 981 ProSitePatterns Protein kinases ATP-binding region signature. 704 727 IPR017441 GO:0005524
Stsc646g00002 981 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 691 774 - -
Stsc646g00002 981 Gene3D Phosphorylase Kinase; domain 1 694 774 - -
Stsc646g00002 981 Pfam Leucine rich repeat N-terminal domain 35 76 IPR013210 -
Stsc646g00002 981 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 316 590 - -
Stsc646g00002 981 Gene3D Transferase(Phosphotransferase) domain 1 775 980 - -
Stsc646g00002 981 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 775 976 - -
Stsc646g00002 981 Gene3D Ribonuclease Inhibitor 35 314 IPR032675 -
Stsc646g00002 981 Pfam Protein tyrosine and serine/threonine kinase 700 966 IPR001245 GO:0004672|GO:0006468
Stsc646g00002 981 Gene3D Ribonuclease Inhibitor 315 591 IPR032675 -
Stsc646g00002 981 SMART LRR_typ_2 224 248 IPR003591 -
Stsc646g00002 981 SMART LRR_typ_2 320 344 IPR003591 -
Stsc646g00002 981 SMART LRR_typ_2 200 223 IPR003591 -
Stsc646g00002 981 SMART LRR_typ_2 516 539 IPR003591 -
Stsc646g00002 981 SMART LRR_typ_2 420 444 IPR003591 -
Stsc646g00002 981 SMART LRR_typ_2 127 151 IPR003591 -
Stsc646g00002 981 SMART LRR_typ_2 540 564 IPR003591 -
Stsc646g00002 981 SMART LRR_typ_2 296 319 IPR003591 -
Stsc646g00002 981 ProSiteProfiles Protein kinase domain profile. 698 970 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc646g00002 981 CDD STKc_IRAK 704 970 - -
Stsc646g00002 981 Pfam Leucine Rich Repeat 226 248 IPR001611 GO:0005515
Stsc646g00002 981 Pfam Leucine Rich Repeat 129 148 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc646g00002 Stsc-Chr646 14473 18044 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc646g00002 16 980 Receptor kinase-like Gene Family AT3G56370 67.868 0.0 1276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Stsc646g00002 PK_Tyr_Ser-Thr 2.5e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc646g00002 - - gmx:100791629 1573.53