Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30275g00006 ATGACCCTCATTGTCAGTGGAACCAACTTCACTACTACAGATATGGATGCTCTTCTTGCTCTCAAATCTTCCATAACCGAGGAGGACCCTCACCACTTCCTCACACATAATTGGTCCACCAATTCCTCATCAGTATGCAACTGGTTTGGTGTCACTTGTGAATATGATTCTCATCATCATCATCATCATCACCATGGAAGGGTAAGAGCCTTGAATCTTGGTGACATGGGTCTTAGTGGTACCATACCCTCTCATTTGGGGAACCTCTCCTTCCTCATTGAACTCAACCTTGGTGGTAACAGTTTCCATCACAACTTGCCACAAGAACTAGTTGGTCTTCATAGATTGAAGTCTCTTAACTTGAGCTACAATCAATTAAGTGGTGATGTTCCACAATGGATTGGAGCCTTATCTTCGCTTCAATACTTGAACCTTAGAAACAATAGGTTTGGTGGTGTGATTCCGAAGTCTATTTCCAATTTAACAGTGCTAGAGACCTTGGATTTTGGCCACAATCTTATTGAAGGATCCATTCCATACGAAGTTGGCAAAATGACCAAGTTGAGGATCTTATCCATATATGAAAACAGTCTCTCCGGTGCCATTCCTCCCACTATTTCTAACCTCTCTTCTTTGCAAGGAATCAGTTTGTCTTATAACTCTCTCTCAGGAGGCATTCCAATGGAGATTGGTGAACTTCAAGAGCTAAGAGTATTATATCTTGGAAATAATCCACTTGGTGGATCCATACCAGCAACAATGTTTAACAGTTCAACGCTGCAAGACATTGAGATTGGGTCAAGCAATTTAACTGGGTCCCTGCCATCAAACATATGTGGTGGACTTGCAAGAATTCAAGTGCTTTACATAGCTTTCAACCAGCTTTCAGGTAAAATCCCTTCGGTTTGGCACCACTGCAAAGAGTTGACCGATGTTGACTTATCAAATAATAGGTTCAACCAAGGGAACATACCTCATGATATTGGAAACTTAACTATGCTTGCCTCCTTGTATCTTAATCAAGCCAACTTACAAGGAGAAATTACACCTCTTTTTAACATATCTTCAATGAGAGCATTCAACGTTGGACAAAACAAATTGAATGGTAGCCTCACAGAAGAGATGTTTCTACAGCTTCCTTTACTAGAATACATTTATCTGGGAGATAATCAATTTGTTGGAACAATTCCAAAATCTATAAGCAATTGCACCATGCTCCAAGAGTTACATTTGGGAAGCAACTATTTCACAGGTTCTATACCAGAGGGCATTGCAGATCTTCTACTCACAAGCTTAAGCATGGGAAATAACCATTTAAGTGGATCAATTCCCTCAAATATCTTCAACATGTCATTGCTGAGTTATTTATTTCTAGCAAATAATTCCCTCTCAGGCCATCTTCCATCACATATCAGCCTTGAAAACATGGAGGAGCTAAACTTGAGTGAAAACAAGCTTAGTGGAAATATCCCAAGTAGCATATCCAATGCTACAAAGGTTAACTACATGGACTTGAAGTTAAATAAATTCAGTGGAGTTATCCCAAATACTATTGGGAATTTGAGAAATCTTCAGCAACTTGATTTAGGATACAATAATTTAACCACTCATTCTTCCACTATTGAAGTAATGTATCCTTCCTTGAATGATCTTTTCATTTCAGGGAATCCATTCCATGCAAAGCTTCCCAAGTCAATTGGAAATATGTCCAATTTGGAACAATTTGACGCTGATGCTTGCGGTATTGGTGGTGAAATCCCTTTGGAAATTGGAAACTTAACCAATCTGTTCATGCTAAGTTTGTACCAGAATGATATAAGAGGAATCATTCCAACTACAATCAAAGGTTTGCAGTCTCTTCAATATTTGAGTGTTGGCAACAATCATCTGCAAGGAACCATCATCAGCGAAATCTGCGAAATCAAGCAGCTGAGTGAGTTGTACATAACTCAGAACAAGCTAATTTCTGGAGAGGTTCCAACATGCTTTGGTAATCTTACTTCTCTAAGAAAACTTTACTTGAACTCCAACAATCTCAAATGGGTGCCTTCTTCTCTTTGGAGCCTCAAAGACATTCTTGAAGTAAACTTATCTGACAATGCCTTAACTCTGTCTCTTCCAATTGAAATTGGGAACTTAAAGGCTGTGACATTCTTGGATGTATCAATGAATAGGATCTCAGGAAGCATTCCTAGGGACGTTTCTGGATTGCAAAACTTGCAAATTCTCAACTTATCACAAAATAAATTAGTTGGGGATATTCCTGACTCACTTGGCAGTATGATGAGTTTGACAGATTTGGACTTATCCCAAAACAACTTGTTTGGCTTGATTCCAAGATCATTGGAGTCACTTCATTATCTTGAATCCATCAATCTTTCTCACAATAATTTGGAAGGAGAGATTCCGAATGGTGGACCTTTCAAATCTTTCACTGCTCAATCTTTCATGTTTAATAAAGCACTTTGTGGAAATGCTAGGCTACAAGTCCCACCATGCAGTAAAGTAAAGAAGAAAAGGTCAAATGCAAACATATTCTTTATCAAATGCATATTGCCTATAATGGTTTCAATCATTTTGGTTGTTTTCTGTGTGTTTTTTCTAGTAAGGCGTCAAAGAAAGAATGGTGGTGATACTAATGAAGGAACATTATCAGTGTTACCAGCAAGAATGATCTCCTACTATGAACTATCACAGGCAACTAATGGATTTGATGAGAGTAATTTACTTGGTAAGGGAAGTTTTGGTTCTGTGTTCAAAGGTTTACTTTCAAACGGGATGGTGGTTGCAGTCAAAGTGTTTAACTTGGACTTGGAATTAGGATCAAAAAGCTTCGGTGTAGAATGCGAAGCAATGCGCAATCTGCGTCATCGAAATCTCATCAAGATCATAGATTGTTGTTCGAGTATAGATTACAAGCTTTTAGTGATGGAGTTCATGCCTAATGGGAGCCTTGAGAGATGGTTGTATTCTCATAACTATTGTCTGGACTTCTTGCAAAGGCTAAACATAATGATAGATGTGGCATCTGCATTGGAGTACCTGCATCATGGAGCTTCACCTAAAGTGGTTCATTGTGATGTAAAACCTTCTAATGTCTTATTGGATGAAGACATGGTTGCCCATGTCAGTGACTTTGGCATAGCCAAACTGCTTGACGAGGGACAATCCAAAGAATATACCAAGACCATGGCTACAGTTGGCTACATTGCACCGGAGTTTGGATCCAAAGGGATTATCTGTACAAATGGAGATGTATACAGTTTTGGGATAATGCTGATGGAAACATTCACAAGAAAGAAGCCAACAGATGACTTGTTTGTTGCAGGATTAAGCATGAAAGGTTGGATTAGTGAATCATTACCTCATGCAATTGATCGAGTTGCAGATTCCAACTTGTTACATGATGAAGGTCACCATGTTGATGACATAATAGCATATACATCATCTATTTTGAAACTGGCCTTGAATTGTTGTGAGGATTTACCTGAAGAGCGAATGAATATGACAGATATTGCTACATCATTGAACAAAATTAAGGCCATGTTTCTTAAAGCTAGTGACAAGGATGTCATGCAGTTTTATAGAAAATGA 3594 0.3859 MTLIVSGTNFTTTDMDALLALKSSITEEDPHHFLTHNWSTNSSSVCNWFGVTCEYDSHHHHHHHHGRVRALNLGDMGLSGTIPSHLGNLSFLIELNLGGNSFHHNLPQELVGLHRLKSLNLSYNQLSGDVPQWIGALSSLQYLNLRNNRFGGVIPKSISNLTVLETLDFGHNLIEGSIPYEVGKMTKLRILSIYENSLSGAIPPTISNLSSLQGISLSYNSLSGGIPMEIGELQELRVLYLGNNPLGGSIPATMFNSSTLQDIEIGSSNLTGSLPSNICGGLARIQVLYIAFNQLSGKIPSVWHHCKELTDVDLSNNRFNQGNIPHDIGNLTMLASLYLNQANLQGEITPLFNISSMRAFNVGQNKLNGSLTEEMFLQLPLLEYIYLGDNQFVGTIPKSISNCTMLQELHLGSNYFTGSIPEGIADLLLTSLSMGNNHLSGSIPSNIFNMSLLSYLFLANNSLSGHLPSHISLENMEELNLSENKLSGNIPSSISNATKVNYMDLKLNKFSGVIPNTIGNLRNLQQLDLGYNNLTTHSSTIEVMYPSLNDLFISGNPFHAKLPKSIGNMSNLEQFDADACGIGGEIPLEIGNLTNLFMLSLYQNDIRGIIPTTIKGLQSLQYLSVGNNHLQGTIISEICEIKQLSELYITQNKLISGEVPTCFGNLTSLRKLYLNSNNLKWVPSSLWSLKDILEVNLSDNALTLSLPIEIGNLKAVTFLDVSMNRISGSIPRDVSGLQNLQILNLSQNKLVGDIPDSLGSMMSLTDLDLSQNNLFGLIPRSLESLHYLESINLSHNNLEGEIPNGGPFKSFTAQSFMFNKALCGNARLQVPPCSKVKKKRSNANIFFIKCILPIMVSIILVVFCVFFLVRRQRKNGGDTNEGTLSVLPARMISYYELSQATNGFDESNLLGKGSFGSVFKGLLSNGMVVAVKVFNLDLELGSKSFGVECEAMRNLRHRNLIKIIDCCSSIDYKLLVMEFMPNGSLERWLYSHNYCLDFLQRLNIMIDVASALEYLHHGASPKVVHCDVKPSNVLLDEDMVAHVSDFGIAKLLDEGQSKEYTKTMATVGYIAPEFGSKGIICTNGDVYSFGIMLMETFTRKKPTDDLFVAGLSMKGWISESLPHAIDRVADSNLLHDEGHHVDDIIAYTSSILKLALNCCEDLPEERMNMTDIATSLNKIKAMFLKASDKDVMQFYRK 1197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30275g00006 1197 ProSitePatterns Protein kinases ATP-binding region signature. 910 932 IPR017441 GO:0005524
Stsc30275g00006 1197 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1023 1035 IPR008271 GO:0004672|GO:0006468
Stsc30275g00006 1197 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 453 1178 - -
Stsc30275g00006 1197 FunFam Leucine-rich repeat receptor protein kinase EMS1 156 253 - -
Stsc30275g00006 1197 Pfam Leucine rich repeat 475 534 IPR001611 GO:0005515
Stsc30275g00006 1197 Pfam Leucine rich repeat 739 798 IPR001611 GO:0005515
Stsc30275g00006 1197 Pfam Leucine rich repeat 643 702 IPR001611 GO:0005515
Stsc30275g00006 1197 Pfam Leucine rich repeat 139 198 IPR001611 GO:0005515
Stsc30275g00006 1197 Gene3D Ribonuclease Inhibitor 280 352 IPR032675 -
Stsc30275g00006 1197 SUPERFAMILY RNI-like 431 803 - -
Stsc30275g00006 1197 Pfam Leucine rich repeat N-terminal domain 13 53 IPR013210 -
Stsc30275g00006 1197 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 543 837 - -
Stsc30275g00006 1197 SMART LRR_typ_2 137 161 IPR003591 -
Stsc30275g00006 1197 SMART LRR_typ_2 185 209 IPR003591 -
Stsc30275g00006 1197 SMART LRR_typ_2 521 544 IPR003591 -
Stsc30275g00006 1197 SMART LRR_typ_2 593 616 IPR003591 -
Stsc30275g00006 1197 SMART LRR_typ_2 473 497 IPR003591 -
Stsc30275g00006 1197 SMART LRR_typ_2 429 450 IPR003591 -
Stsc30275g00006 1197 SMART LRR_typ_2 785 809 IPR003591 -
Stsc30275g00006 1197 SMART LRR_typ_2 233 257 IPR003591 -
Stsc30275g00006 1197 SMART LRR_typ_2 379 403 IPR003591 -
Stsc30275g00006 1197 SMART LRR_typ_2 666 689 IPR003591 -
Stsc30275g00006 1197 SMART LRR_typ_2 737 761 IPR003591 -
Stsc30275g00006 1197 SMART LRR_typ_2 113 136 IPR003591 -
Stsc30275g00006 1197 SMART LRR_typ_2 617 641 IPR003591 -
Stsc30275g00006 1197 Gene3D Ribonuclease Inhibitor 353 540 IPR032675 -
Stsc30275g00006 1197 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 980 1189 - -
Stsc30275g00006 1197 SMART LRR_sd22_2 521 543 - -
Stsc30275g00006 1197 SMART LRR_sd22_2 473 499 - -
Stsc30275g00006 1197 SMART LRR_sd22_2 185 211 - -
Stsc30275g00006 1197 SMART LRR_sd22_2 161 182 - -
Stsc30275g00006 1197 SMART LRR_sd22_2 761 787 - -
Stsc30275g00006 1197 SMART LRR_sd22_2 641 668 - -
Stsc30275g00006 1197 SMART LRR_sd22_2 233 265 - -
Stsc30275g00006 1197 SMART LRR_sd22_2 593 619 - -
Stsc30275g00006 1197 SMART LRR_sd22_2 713 739 - -
Stsc30275g00006 1197 SMART LRR_sd22_2 113 145 - -
Stsc30275g00006 1197 SUPERFAMILY Protein kinase-like (PK-like) 881 1176 IPR011009 -
Stsc30275g00006 1197 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 305 542 - -
Stsc30275g00006 1197 Gene3D Transferase(Phosphotransferase) domain 1 980 1194 - -
Stsc30275g00006 1197 Gene3D Phosphorylase Kinase; domain 1 886 979 - -
Stsc30275g00006 1197 ProSiteProfiles Protein kinase domain profile. 904 1184 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30275g00006 1197 FunFam Serine-threonine protein kinase plant-type 885 979 - -
Stsc30275g00006 1197 PRINTS Leucine-rich repeat signature 737 750 - -
Stsc30275g00006 1197 PRINTS Leucine-rich repeat signature 116 129 - -
Stsc30275g00006 1197 Gene3D Ribonuclease Inhibitor 178 279 IPR032675 -
Stsc30275g00006 1197 Gene3D Ribonuclease Inhibitor 11 177 IPR032675 -
Stsc30275g00006 1197 Pfam Leucine Rich repeat 114 128 IPR001611 GO:0005515
Stsc30275g00006 1197 SMART serkin_6 904 1183 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30275g00006 1197 SUPERFAMILY L domain-like 276 425 - -
Stsc30275g00006 1197 FunFam Leucine-rich repeat receptor protein kinase EMS1 62 155 - -
Stsc30275g00006 1197 SUPERFAMILY L domain-like 14 319 - -
Stsc30275g00006 1197 Pfam Protein kinase domain 905 1173 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30275g00006 1197 Gene3D Ribonuclease Inhibitor 541 842 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30275g00006 Stsc-Chr30275 20023 24698 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30275g00006 14 1181 Receptor kinase-like Gene Family AT5G46330 33.750 2.32e-178 555
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Stsc30275g00006 Pkinase 3.9e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30275g00006 - K13420 gmx:100784397 1650.57