Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242223g00007 ATGGCATCTTCGAAAGCTTTCCAAATAAAACTTGTTGTATTTGTTGCTCTCCTGCTTATTTCAAAATTCAAGGGCATGGAAGAAAACATGATATCAGAAAATTCTTATTCATATGAGGATGAAACTTTGGCTTTCCCAGCTCCTCAAATAATATATGATGTCTTTGTTAGCTTTAGGGGCACAGATATCCGCCAAGGTTTACTTAGTCATTTGATTAAGGCATTTTATCAGAAACAAATTTTTGCCTTTGTTGATGACAAGCTTGAGAGGGGAGATGACATATCAGAGGCACTTCTTAGAGCAATAGAAAAGTCTCTGATATCATTGGTCATATTCTCACAAGACTATGTTTCTTCGAGATGGTGTTTAGAAGAACTTGTAAAAATAGTTGAGTGTAGAGAAAAAGATGGCCACACTGTAATACCTGTTTTCTACAAAGTAGATCCGTCAGATGTACGATATCAGAAGGGTAACTTTGCAAATACGTTTGACGAACACGAGAAAAGGTATGGTAAGATCAAGGTGCAAAATTGGAGAACTGCTTTGAAAAGCACTGCTGATTTATCAGGATTTCACTCCACAAATTTTAGGAATGATGCTCAGCTTGTTGATCAAATTGTTGATATTATATCATCAAAATTAAATGACATGCATCAAGTTAAATCTAAAGGACTTGTTGGAATTCACAAACCAATTTCACAGTTAGAGTCTTTGATGCTCAAAGAATCAGAAGATGTCCGTGTTATTGGAATTTGGGGCTTGGGCGGTATTGGTAAGACAACCATTGCAGAAGAAGTATACAATAGAATGTGTCCCAAATACGGATCTTGCTGTTTCTTGGCAAATGTAAGAGAAGAGTCAGAAAGACATGGAATACTTTCTTTGAAGAAGAAGCTCTTTTCTACACTATTGAATGAAGAAAGTTTGAGAATTGACTTACGAAAGGGATTGCCTGATTATGTTGAGAAAAGGCTTGGTCGCATGAAGGTCCTCATTGTTCTTGATGATTTGAATGATTCTGACCAGTTAGAAACATTGATTGGAGCTCGTGATTCGTTTGGATTAGGCAGTAGAATCATTATAACCACTAGAGATAAGCAAGTGCTTGTTGGAGAAGCCAAAGATATATACCAAGTTGAGGCATTGGACTGTGATGAATCTCTTGAACTCTTCATTCTAAATGCCTTCAAACAGGACCAGTTTGAAATGGAGTATTGTGAGCTTTCAAGGAGGGTGGTCGAGTATGCCAAAGGCATTCCACTAGTTGTTAAAGTTTTGGCTCAGCTTCTTCGCGGGAAACAAAAGGATATATGGGAAAGTCAATTGGAGAAGCTTAAGAGAATGCCTAATAAGAAAGTTCATGATATATTGCGGCTGAGCTACGATGATCTTGATCGTCAAGAGCAACAGATTTTTTTGGACATTGCCTGCTTTTTCAATGGATTGAAGTTGAAATTGGAATACATAAACGTTTTACTGAAAGACCATGATTATTCAGTGGCTGCTGAGATGGAGAGGCTAAAAGATAAGGCTCTTATAATTATTTCTGATCAAAATATTGTATCTATGCATGATATTATTCAAGAAATGGCTTGGGAGATCATTCATGATGGCTCTGCTGAATACCCTGGAAACCAACTTCGGTTATGGGATTCTCATGACATATATCAAGTATTTAAAAACAACAAGGGGAGTGAGGCCATTAGAAGCATATCCTTCAACTTCTCAGCAGTTAAGGACCTTCAGTTAAGCCAAGAAGTATTTGCTAAGATGAGCAAACTAAGATTTCTAAATTTCTATAGCAATATATCTCAAGAGGCCTTTAATAGTCTTGATGGACTTCCGTCTTCGTGGAACAAAGCCCTTAATATTGGACTTGTCTTTCAACCTAATGGAAAAACTTTGGTGTGGAGTGAAGAATCTGGTGAATTTAAAGATCCTTAG 1944 0.3704 MASSKAFQIKLVVFVALLLISKFKGMEENMISENSYSYEDETLAFPAPQIIYDVFVSFRGTDIRQGLLSHLIKAFYQKQIFAFVDDKLERGDDISEALLRAIEKSLISLVIFSQDYVSSRWCLEELVKIVECREKDGHTVIPVFYKVDPSDVRYQKGNFANTFDEHEKRYGKIKVQNWRTALKSTADLSGFHSTNFRNDAQLVDQIVDIISSKLNDMHQVKSKGLVGIHKPISQLESLMLKESEDVRVIGIWGLGGIGKTTIAEEVYNRMCPKYGSCCFLANVREESERHGILSLKKKLFSTLLNEESLRIDLRKGLPDYVEKRLGRMKVLIVLDDLNDSDQLETLIGARDSFGLGSRIIITTRDKQVLVGEAKDIYQVEALDCDESLELFILNAFKQDQFEMEYCELSRRVVEYAKGIPLVVKVLAQLLRGKQKDIWESQLEKLKRMPNKKVHDILRLSYDDLDRQEQQIFLDIACFFNGLKLKLEYINVLLKDHDYSVAAEMERLKDKALIIISDQNIVSMHDIIQEMAWEIIHDGSAEYPGNQLRLWDSHDIYQVFKNNKGSEAIRSISFNFSAVKDLQLSQEVFAKMSKLRFLNFYSNISQEAFNSLDGLPSSWNKALNIGLVFQPNGKTLVWSEESGEFKDP 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242223g00007 647 SUPERFAMILY Toll/Interleukin receptor TIR domain 48 191 IPR035897 -
Stsc242223g00007 647 SMART till_3 51 188 IPR000157 GO:0007165
Stsc242223g00007 647 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 52 613 IPR044974 GO:0006952
Stsc242223g00007 647 SUPERFAMILY "Winged helix" DNA-binding domain 451 559 IPR036390 -
Stsc242223g00007 647 Gene3D - 217 379 IPR027417 -
Stsc242223g00007 647 Gene3D - 381 465 IPR042197 -
Stsc242223g00007 647 Pfam TIR domain 52 225 IPR000157 GO:0007165
Stsc242223g00007 647 Gene3D - 51 216 IPR035897 -
Stsc242223g00007 647 Pfam NB-ARC domain 240 463 IPR002182 GO:0043531
Stsc242223g00007 647 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 215 475 IPR027417 -
Stsc242223g00007 647 ProSiteProfiles TIR domain profile. 50 214 IPR000157 GO:0007165
Stsc242223g00007 647 PRINTS Disease resistance protein signature 324 338 - -
Stsc242223g00007 647 PRINTS Disease resistance protein signature 416 430 - -
Stsc242223g00007 647 PRINTS Disease resistance protein signature 248 263 - -
Stsc242223g00007 647 FunFam Disease resistance protein (TIR-NBS-LRR class) 49 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242223g00007 Stsc-Chr242223 27803 30175 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242223g00007 52 616 WRKY Transcription Factor Family AT4G12020 30.070 1.54e-68 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242223g00007 - - gmx:100802823 727.628