Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211889g00006 ATGGGGCTAATTAAAAAGCCACCAAACCAATCCGAACCCAACCGCGGCCCTCGGCCCTACTTGGTCTACGATGTTTTCTTGAGCTCCGTCGGAAGGGGAAACGCCGAGTCAATGAGATACACTAAATGCCTCTATTATTCTCTTGAAAAGGCAGGGTTCTCTGTTTTCTGGGATTACGCTGGTGGCTCGTTTCTGGGGGACGATCACCACATCTTCCTCCAACTACTGCAAATCATCCAAAGGGCCAGAGTTTCTGTTGCTGTTCTTTCAACTGCCTCTGTTGCTTCACCGAGGAATCTGGAGCTGCTGGAACTGATGCTTGAGTGTCGCAGAAACGCCGGCCAGTTCATTCTGCCGGTGTTCTTGGGTGTGACTCCCAGAGATATTCGAGAAGCTTTTGCTGATTTCACAAAGAGAATCTCCGAGAAAGATAAGGTCGAGTGTTGGAAGGTAACTTTGGCTCAAATCTGTCAAATCCAATCTTACCAGTGGGTTTACCTCAACAACAATCATCAATGGAGTGACAATGATATGCATATCAGGAATGTTGTGGAACATGTTGGAGGCTTGTTGAACGGAAGAAACTTGTTTGTTGCCGAATATCAAGTGGAAGTAGGATACCGAGTGCAAGAAGCCACTAAACTGTTAGTCCACTCAAAATCAAAGGAGGTTCTTCTACTTGGGATATGGGGAATGGAGCAGTTGAATGCCTTGTGTGGAAGTAGTGAATGGTTTGGTCCCGGGAGTATGATAATAGTCACGACAAGAGATAGAAGTCTACTTCAGGATCATAGAGTTGACCATGTGTATACAATGAAAGAAATGAAAAAAAATAAATCTCTCGAGCTTTTTAATTGGTATGTATTCAAAAAGGCAGCTAATAAGCAATATCTTGATGAACTTTCTAAAATTGTAGTTGCTTATGCTGGAGGATTGCCACTAGCTTTGGAAGTCCTTGGCTCCAAACTTCTTGGAAGCTTGGATAGTATTCCTGATGGACTCATAGACTCTCCTCATCCTGTGCTACAGAAGGTTCTGAAAAAATGTGTGAAGATTTAA 1059 0.4363 MGLIKKPPNQSEPNRGPRPYLVYDVFLSSVGRGNAESMRYTKCLYYSLEKAGFSVFWDYAGGSFLGDDHHIFLQLLQIIQRARVSVAVLSTASVASPRNLELLELMLECRRNAGQFILPVFLGVTPRDIREAFADFTKRISEKDKVECWKVTLAQICQIQSYQWVYLNNNHQWSDNDMHIRNVVEHVGGLLNGRNLFVAEYQVEVGYRVQEATKLLVHSKSKEVLLLGIWGMEQLNALCGSSEWFGPGSMIIVTTRDRSLLQDHRVDHVYTMKEMKKNKSLELFNWYVFKKAANKQYLDELSKIVVAYAGGLPLALEVLGSKLLGSLDSIPDGLIDSPHPVLQKVLKKCVKI 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211889g00006 352 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 232 326 IPR044974 GO:0006952
Stsc211889g00006 352 Pfam NB-ARC domain 219 323 IPR002182 GO:0043531
Stsc211889g00006 352 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 162 325 IPR027417 -
Stsc211889g00006 352 Gene3D - 274 332 IPR042197 -
Stsc211889g00006 352 Pfam TIR domain 23 195 IPR000157 GO:0007165
Stsc211889g00006 352 SMART till_3 22 159 IPR000157 GO:0007165
Stsc211889g00006 352 ProSiteProfiles TIR domain profile. 21 191 IPR000157 GO:0007165
Stsc211889g00006 352 SUPERFAMILY Toll/Interleukin receptor TIR domain 22 155 IPR035897 -
Stsc211889g00006 352 Gene3D - 21 198 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211889g00006 Stsc-Chr211889 23046 25794 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211889g00006 235 325 WRKY Transcription Factor Family AT5G45050 35.165 2.59e-13 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211889g00006 - - ahf:112749677 286.96