Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120860g00013 ATGAATTGCTTTCCGTGCTTTACTTCTCAAAAAAGCAAGAAAAGCAGTAGCAGCAAGGATTTTTCTCCTCCTCCACAGCAAGAAGTTGCAACAAGACCACCAGATGTAAAGAAACCAAAGGCAGAAGACACGAACCAAGTAGACACATCGAGTATTCAAGCAAACAATTTCACATTCCGTGAGCTAGCAACTGCAACAAAGAATTTCCGGCAAGAAATGTTGATGGGTGAAGGTGGCTTTGGCAGAGTCTACAAGGGCACAATCCCCGCAACCGGTCAGGTGGTAGCCGTGAAGCAACTTGATCGAACCGGAATGCAAGGTGGAAGCAAGGAATTTCTGGCTGAGGTTTTGACGCTAAGCCTCTTGAGCCATGAAAATCTCGTTAAACTCACTGGCTACTGTGCCGATGGAGATCAACGCCTTTTGGTATATGAATTCATGGCTGCAGGCTCTTTAGATAAACGCCTTCTCGATAGGGGAGCAGATCAACCTCCATTAAATTGGTACATCAGAATGAAGATAGCATCTGATGCGGCCAAAGGACTATGGTACTTGCATGACATGGCAAATCCACCTCTCATATACAGGGACTTGAAATCCTCCAACATCTTGCTGGACAATGATAACAATGCAAAGCTATCAGATTATGGACTTTCCAAACTTGCTGGTAAAGATAACACCAACATTGTTCCTACTAGAGTTATGGGCACCTATGGTTATAGTGCCCCGGAATACGTAAGAACAGGTCAAATCACCTTGAAATCAGATGTCTATAGCTTTGGTGTAGTCTTGCTAGAGCTCATAACGGGACGCCGCGCCGTCGACACCACTAGACCCAACGACGAGCAAAATCTAGTTTCATGG 864 0.4514 MNCFPCFTSQKSKKSSSSKDFSPPPQQEVATRPPDVKKPKAEDTNQVDTSSIQANNFTFRELATATKNFRQEMLMGEGGFGRVYKGTIPATGQVVAVKQLDRTGMQGGSKEFLAEVLTLSLLSHENLVKLTGYCADGDQRLLVYEFMAAGSLDKRLLDRGADQPPLNWYIRMKIASDAAKGLWYLHDMANPPLIYRDLKSSNILLDNDNNAKLSDYGLSKLAGKDNTNIVPTRVMGTYGYSAPEYVRTGQITLKSDVYSFGVVLLELITGRRAVDTTRPNDEQNLVSW 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120860g00013 288 Gene3D Phosphorylase Kinase; domain 1 38 146 - -
Stsc120860g00013 288 SMART serkin_6 69 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120860g00013 288 CDD STKc_IRAK 75 288 - -
Stsc120860g00013 288 Pfam Protein kinase domain 70 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120860g00013 288 SUPERFAMILY Protein kinase-like (PK-like) 55 283 IPR011009 -
Stsc120860g00013 288 ProSiteProfiles Protein kinase domain profile. 69 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120860g00013 288 ProSitePatterns Serine/Threonine protein kinases active-site signature. 193 205 IPR008271 GO:0004672|GO:0006468
Stsc120860g00013 288 PANTHER OS07G0668900 PROTEIN 3 288 - -
Stsc120860g00013 288 Gene3D Transferase(Phosphotransferase) domain 1 147 288 - -
Stsc120860g00013 288 FunFam Os07g0541700 protein 147 237 - -
Stsc120860g00013 288 FunFam probable serine/threonine-protein kinase RLCKVII 41 146 - -
Stsc120860g00013 288 MobiDBLite consensus disorder prediction 1 50 - -
Stsc120860g00013 288 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120860g00013 Stsc-Chr120860 84092 85305 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120860g00013 1 288 Glycoside Hydrolase AT3G07070 61.745 4.77e-125 361
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Stsc120860g00013 Pkinase 2.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120860g00013 - - ahf:112759084 513.072