Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1018g00003 ATGGAAGCCGCCGTGGTTGATGTCGGGACTAAGCTACTCAAAGCTGGCTTCGCAATTCCCGATCAGCCTCCGGCCATGATAATTCCCACTCAGATGAAAAGAGTGCTTGATGATGGTGGGTCTGTGGCTGATGCTAGTTCAGTAGCTGATAGTGTTACTGTTGATCCAGTGGTGCGAGGGTTTGTCAGAGATTGGGACGCCATTGAGGATTTATTGCATCATGTCTTGTATAGTGGCCTTGGATGGGAAATTGGCAATGAAGGACAGATATTATTCACAGATCCACTCTGCACCCCCAAGGCCAACAAGGAACAGCTAGTACAACTAATGTTTGAAACATTCAACATATCAGGGTTTTATGCCTCAGAACAAGCAGTGTTATCACTTTATGCTGTGGGACGTATCTCAGGGTGCACAGTTGATATTGGACATGGAAAAATAGATATTGCGCCAGTAATTGAGGGTGCTGTCCATNNNNNNNNNNGATTCGAATTTGGAGGTACTGATCTAACTAATTTCTTGGCACAAGAACTTGGAAAATCCAATCCACAAGTAAATATCAGCTTGTCTGATGTGGAGAGAATAAAAGAACAATTCTCATGTGCTGCTGAAGATGAATTAGCTTATCAAAAGACTGTATCTTGTCCTGTGGAGAAACATACCCTTCCTGATGGACAGGTCATAACAATTGGGAGAGAAAGATATACTATTGGTGAAGCTTTATTCCAGCCAAGTCTATTGGGTTTGGAGGCTCATGGCATCGTTGAGCAGCTTGTCCGTGCTGTTTCAACTGTGTCACCTGATAATCATCGGCAGCTGCTGGAAAATACTGTGGTTTGTGGAGGCACTTCTTCTATGACCGGTTTTGAAGAGAGATTTCAGAAGGAGTGTAGCTTAAGTTCATCTGCCATTCAACCTGCCCTGGTTAAGCCTCCAGAGTACATGCCAGAGAACTTAACCCAGTATTCTGCATGGGTGGGAGGTGCCATACTAGCCAAAGTAGTTTTCCCTCAAAATCAACACATAACCAAGGGAGATTACGATGAAACCGGACCTTCCATTGTTCACCGGAAATGCTTCTAA 1083 0.4386 MEAAVVDVGTKLLKAGFAIPDQPPAMIIPTQMKRVLDDGGSVADASSVADSVTVDPVVRGFVRDWDAIEDLLHHVLYSGLGWEIGNEGQILFTDPLCTPKANKEQLVQLMFETFNISGFYASEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVHXXXXFEFGGTDLTNFLAQELGKSNPQVNISLSDVERIKEQFSCAAEDELAYQKTVSCPVEKHTLPDGQVITIGRERYTIGEALFQPSLLGLEAHGIVEQLVRAVSTVSPDNHRQLLENTVVCGGTSSMTGFEERFQKECSLSSSAIQPALVKPPEYMPENLTQYSAWVGGAILAKVVFPQNQHITKGDYDETGPSIVHRKCF 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1018g00003 360 PANTHER ACTIN 4 353 IPR004000 -
Stsc1018g00003 360 PRINTS Actin signature 216 232 IPR004000 -
Stsc1018g00003 360 PRINTS Actin signature 47 69 IPR004000 -
Stsc1018g00003 360 PRINTS Actin signature 102 115 IPR004000 -
Stsc1018g00003 360 PRINTS Actin signature 127 146 IPR004000 -
Stsc1018g00003 360 FunFam Actin-related protein 7 4 129 - -
Stsc1018g00003 360 SUPERFAMILY Actin-like ATPase domain 133 360 IPR043129 -
Stsc1018g00003 360 Gene3D Actin; Chain A, domain 4 165 251 - -
Stsc1018g00003 360 SMART actin_3 1 360 IPR004000 -
Stsc1018g00003 360 FunFam Actin-related protein 7 165 251 - -
Stsc1018g00003 360 Gene3D - 5 354 - -
Stsc1018g00003 360 SUPERFAMILY Actin-like ATPase domain 2 140 IPR043129 -
Stsc1018g00003 360 CDD NBD_sugar-kinase_HSP70_actin 35 166 - -
Stsc1018g00003 360 Gene3D - 125 323 - -
Stsc1018g00003 360 Pfam Actin 2 360 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1018g00003 Stsc-Chr1018 11352 14968 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1018g00003 5 360 Cytoskeleton Gene Families AT1G49240 38.564 2.08e-72 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1018g00003 K16615 - gmx:100813266 633.254