Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g3740 ATGCTATTGTTGACATTTGACAGCGGACCCAGTGTCCTAATGTGTATGTTTACCTCCTCAAATATGAGTTCCCAGATGAAGAAAGAAGGCACCATGAGCAGAAGGAAGAGGACGCTCACTAGGGATCTGATGGGTAGAACGAATTCAGACTTCGAGGGAGATAGAGCTACAAGCCTACAAGGCATGCATGTTCTCAGAGCAAGGGCTGCTCTGCCTCTCCGCTCAACTGCGGAGGCCTTATGTAAATCCAAGTGGCATCAACATGGCGGTGAAAGGCTCCATATCCTACGAATGCTTACCACAACGCGAGGTGCTGATTTTATGGAATCTGGAGCAGGATTAACTACCTCTCATATGCAAAAGCAAATTGTTGATGCGCTCCGCTTGGGTGAGAGAAGAAAGGCTTCTAACCTACTTTTAGATTTTAGTTACAGAAGACAATCATTAACAGCTGATGATTTTGTTGATATTATTAACTACTGTGCACGGACGCCTGATCCATTGTTTGTTATGGAGATTTGGAAATTGTTGGAGGCAAGTAATATTAGCCTGAATAATATGTGTTTGTTTCTTATAATGCAAGCCCTCTGTAAAGGGGGTTACTTGGAGGAGGCCTTTAATATGATGAATTTTGTTAGAGAAAGCCAGCACCTCTATCCTGTTCTTTCTTTGTACAATAGTTTCTTAAGAGCCTGTGCAGACATGCAGAATATAACTCATGCAAGCAAGTGTTTGGACTTGATGGAAAAGCAGATGGTTGGGAGGAATGAAGATACATATACAGAGCTTCTTAAGCTTGCAGTTTTGCAGAACAACTTGTCTGTAGTCCATCAAATTTGGGAGGAGTATATTAAACAATACAGTATGAGCATCATCGCTCTGCGTAAATTTATTTGGTCATTTACAAGGTTGGGAGATTTGACGTCTGCATTTAATGCTCTACAACAAATGGTTTCCTTTGCCAACAGTGGACACATATTTATTGATAGTAAAGTTGATGGAAAGTTGTATTCTACTAGATTGGACATTCCTGTTCCTTCAAATAGGAGGCCAAGTTCAACCATATTGGACATGAAGGAAAATCAACAAGTGAACTCTTCTACTTGCCCTCCTTCTGTATATTTATTAGATGCCACTTCTGCAAGTTTAGAgcaacaaattatttttatgggATATGAAGAAGCTAAGAGTGCTGAAATGAGTAGGCTGAATGGACAGAAACACACAACACCATTTTTTAAGGTTCTGAGGTCGTCCTTTAGTGATGTAATACATGCATGTGCGCAAGGTCAAAATTATGGGATTGCAGAGCAGCTTTTCCTGCAGATGCAAAATCTTGGGTTGCAGCCATCCAGCCATACTTATGATGGCTTTGTCAGAGCTGTTGTTTCTGAAAGGGGTTTCAGTGATGGCTTGGAAGTGGTGAGTTCTGATAGCCTGCTTGTTGCACTATTAGCTTCAGGCAAGTTGAAAGTAATGCGGCAGAAAAATTTGAAGCCATATAATTCAACTCTAGCAACACTTTCAATCTGTTGCAGTGAAGCACAAGAACTAGATATAGCTGAGGCTTTGCTGAATCAGATTTCTGAATATCCACATCCACATCCTTATAATGCTCTTCTAGCATCGTGTGACAAGATGAATCAACCTGAACGTGCTGTGCGGGTCTTAGCCAAGATGAAGCAGATGAATATGCTACCTGATATCAGGACATATGAGTTATTGTTTTCACTGTTCACTAATGTAAATGCCCCATATGAAGAGGGCAATATGATATCACAGGTAGATGCTGCTAAAAGAATCAGCGCTATAGAAAGTGATATGGCCAAAAATGGCATTCCCCACAGTTCTCTTTCAATGAAAAGCTTGTTGAAGGCCCTCGGAGAGGAAGGAATGATAACAAAGATGATCCAATACTTACATGTGGCAGAAAATCTTTTCATTCATAGAGAACCTTCTTTGGGAACAGCTATGTACAACTTAGTGTTACATTCTCTTGTTGAAGCCaaagaaAGTCACAGGGCaattgaaattttcaagaagatGAAGTTTTGTGGCTTCAAGAGCGATGCTGCAACATATAATATCATGATTGATTGTTGTAGCATCCTAAGATGTTTCAAATCTGCTTCTTTGCTGGTTTCAATTATGATACGTGAAGGGTTTTATCCGGACACTCCAACATATACTGCACTTATTAAGATTCTGTTGGGAAATGAGAACTTCAATGAAGCCTTGAATCTTCTGAATCGTGTGAGATTGGATGGAAAGCAACTTGATGTACTATTGTTTAATACAATTCTTCAAAAAGCCTGTGACAAGAGAAGGATTGATGTTATTGAGTTCATTGTGGAGTGTATGCACCAAGAGAAAGTTCAGCCCGATCCATCAACCTGCAGCTATGTGTTCTCTGCATATGTGAACTCCGGTTTTCTCAACACAGCAATTGAAGCATTGCAAGTTTTAAGTTTGCGTATGATGGGTGTAGATGGTGACATGtatgaagagaagaaagaatttGTGGATGAATTCATCCTTGCTGAAGATTCAGGTGCTGAGTCACGGATACTTGCATTTTTTAAAGAGTCTGAAGAGAATCTTGCCATTGCCCTGTTGAATTTACGATGGTGTGCCATGGCTGGGTTCCCCATGTGTTGTGGTTGGTTCTTCAAGGGGAGTCGTGAACACCGAATTGTGAGTCTCCAGGTCCTATCAAATAGACAACTGGCTGCATACAAGTTCTTGACGAGTTGTGGAGGTTCAGTACTGGGAAGCACAAATGAAGGTATATCGTATTTTATGTCACCTGTAGCCAACATCGTTCCTGTAGCTCTAAGAGCTTTTCAGTGTTATGATCAGAACCTCACAATAGATGGGATAAAGAGCTGCATGATCACCAGATTGGGAATATAA 2913 0.4003 MLLLTFDSGPSVLMCMFTSSNMSSQMKKEGTMSRRKRTLTRDLMGRTNSDFEGDRATSLQGMHVLRARAALPLRSTAEALCKSKWHQHGGERLHILRMLTTTRGADFMESGAGLTTSHMQKQIVDALRLGERRKASNLLLDFSYRRQSLTADDFVDIINYCARTPDPLFVMEIWKLLEASNISLNNMCLFLIMQALCKGGYLEEAFNMMNFVRESQHLYPVLSLYNSFLRACADMQNITHASKCLDLMEKQMVGRNEDTYTELLKLAVLQNNLSVVHQIWEEYIKQYSMSIIALRKFIWSFTRLGDLTSAFNALQQMVSFANSGHIFIDSKVDGKLYSTRLDIPVPSNRRPSSTILDMKENQQVNSSTCPPSVYLLDATSASLEQQIIFMGYEEAKSAEMSRLNGQKHTTPFFKVLRSSFSDVIHACAQGQNYGIAEQLFLQMQNLGLQPSSHTYDGFVRAVVSERGFSDGLEVVSSDSLLVALLASGKLKVMRQKNLKPYNSTLATLSICCSEAQELDIAEALLNQISEYPHPHPYNALLASCDKMNQPERAVRVLAKMKQMNMLPDIRTYELLFSLFTNVNAPYEEGNMISQVDAAKRISAIESDMAKNGIPHSSLSMKSLLKALGEEGMITKMIQYLHVAENLFIHREPSLGTAMYNLVLHSLVEAKESHRAIEIFKKMKFCGFKSDAATYNIMIDCCSILRCFKSASLLVSIMIREGFYPDTPTYTALIKILLGNENFNEALNLLNRVRLDGKQLDVLLFNTILQKACDKRRIDVIEFIVECMHQEKVQPDPSTCSYVFSAYVNSGFLNTAIEALQVLSLRMMGVDGDMYEEKKEFVDEFILAEDSGAESRILAFFKESEENLAIALLNLRWCAMAGFPMCCGWFFKGSREHRIVSLQVLSNRQLAAYKFLTSCGGSVLGSTNEGISYFMSPVANIVPVALRAFQCYDQNLTIDGIKSCMITRLGI 970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g3740 970 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 533 567 IPR002885 -
Sto9g3740 970 Pfam Pentatricopeptide repeat domain 748 808 IPR002885 -
Sto9g3740 970 Pfam Pentatricopeptide repeat domain 537 580 IPR002885 -
Sto9g3740 970 Gene3D Tetratricopeptide repeat domain 413 658 IPR011990 GO:0005515
Sto9g3740 970 Gene3D Tetratricopeptide repeat domain 659 854 IPR011990 GO:0005515
Sto9g3740 970 Gene3D Tetratricopeptide repeat domain 116 300 IPR011990 GO:0005515
Sto9g3740 970 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 690 724 IPR002885 -
Sto9g3740 970 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 655 689 IPR002885 -
Sto9g3740 970 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 69 896 - -
Sto9g3740 970 Pfam PPR repeat family 656 701 IPR002885 -
Sto9g3740 970 Pfam PPR repeat 192 213 IPR002885 -
Sto9g3740 970 TIGRFAM PPR: pentatricopeptide repeat domain 658 690 IPR002885 -
Sto9g3740 970 TIGRFAM PPR: pentatricopeptide repeat domain 693 726 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g3740 418 835 Glycosyltransferase AT1G05670 21.090 2.13e-13 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g3740 - - qlo:115974617 996.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g3740 9 35576553 35587225 Sto9g3740 9 35576553 35587225 ECH