Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g3727 ATGGCTCTCACCATATCCAGAGTACGCTTCCCCCACTCTCTATCACGCATTTCCAAACTATATTCTTCTTCAACTTTAGTTTCAGAAGCACAAGCACCTCTTCAACCGCTTACGGAAGACAATACAGAAACGGCCCAAACCACCAACTTATCTTCTGAGCAAACCCTTGTAGCCGACAAATTTCACGCTTTAATCAAAGACCATCACCGCAAGAATCCCAACCCTAACGCCATTCCTCCACCCCCTAATTTTACAATTCCTGATCTCTCCCTCGATTTTTCTCGAATCTCTGACATCCGTCCACTTCCACCTTCTCTCGTCCGCCGCGTGATCGAAAAATGCGGTGGCGTCCGCCATGGTATCCCTTTCCTGCAATCCCTCGCTTTCTTTAACTGGGCCACCACAAGCGAGGGCTTTCCCGCCTCTCCCGAGCCCTACGTTGAGATGATTGACCTCGCCGGGAAGATGAGGCACTTCGATTTAGCCTGGAATCTGATTGATTTGATGAAAGCCCGTGGTGTGGAAATAACGGTGGAGCCCTTCTCCGCTCTCGTCCGGCGGTACGTGAGAGCTGGATTGGCTGCTGAGGCGGTGCACACGTTTAATCGTATGGAAGATTATGGCTGCACACCTGATAAGATTGCATTCTCTATTGTGATTAGTATTCTGTGCAAGAAGAGAAGAGCAAGCGAAGCTCAGTCTTTCTTTGATAGTTTGAAGCAGAGATTTGAGGCGGATGTGATAGTGTACACAAACTTAGTTCGCGGTTGGTGCCGAGCAGGTAATATTTCAGAGGCTGAGCGCGTATTTAGGGAAATGAAGATGGCTGGAATTAAGCCTAATGTCTATACATACAGCATTGTGATTGATTCCCTGTGTCGGTGCGGCCAAATCACTCGTGCTCATGATGTTTTCTCTGAGATGCTAGATGCGGGTTGTGAACCCAATTCTATTACTTTTAATAATCTAATGCGCGTTCATGTGAAGGCTGGACGGACTGAAAAGGTCTTGCAAGTTTACAATCAGATGAAGAGACTTGGATGTGCTGCTGATACCATTACCTATAATTTCCTAATAGACACGCATTGTAAAGATGATAATCCAAAAGAAGCTACCAAGGTTCTCGATTCAATGGTTAACAAGGGGTGTGCTCCTAATGTCTCTACGTTCAATCCTATGTTTCGATGCATAGCCAAGTTGAAGGATATAAACGCTGCTCATCGGTTGTATGCTAGAATGAAGGACCTCAAGTGTCAACCCAATACTGTCACTTACAATATATTAATGAGTATGTTCGCTCATGCAAAATCCATTGACATGGTTCTGAAAATGAAGAAGGAAATGGAGGAGAATGAAGTTGAGCCTAACGTCAATACTTACCGAGTTCTGATTTCATTGTATTGCGGGATGGGGCATTGGAACAACGCCTACAAGTTTCTGAGGGAGATGATTGAAGAGAAATGCCTAAAACCAAATCAATTGCTTTACGAAATGGTTCTGAGCGAGCTGAGGAAGGCAGGACAGTTGAAGAAGCATGAGGAATTGGTGGATAAGATGGTTGACAGGGGGTTTGTCTCGCGCTCTTTATAG 1590 0.4535 MALTISRVRFPHSLSRISKLYSSSTLVSEAQAPLQPLTEDNTETAQTTNLSSEQTLVADKFHALIKDHHRKNPNPNAIPPPPNFTIPDLSLDFSRISDIRPLPPSLVRRVIEKCGGVRHGIPFLQSLAFFNWATTSEGFPASPEPYVEMIDLAGKMRHFDLAWNLIDLMKARGVEITVEPFSALVRRYVRAGLAAEAVHTFNRMEDYGCTPDKIAFSIVISILCKKRRASEAQSFFDSLKQRFEADVIVYTNLVRGWCRAGNISEAERVFREMKMAGIKPNVYTYSIVIDSLCRCGQITRAHDVFSEMLDAGCEPNSITFNNLMRVHVKAGRTEKVLQVYNQMKRLGCAADTITYNFLIDTHCKDDNPKEATKVLDSMVNKGCAPNVSTFNPMFRCIAKLKDINAAHRLYARMKDLKCQPNTVTYNILMSMFAHAKSIDMVLKMKKEMEENEVEPNVNTYRVLISLYCGMGHWNNAYKFLREMIEEKCLKPNQLLYEMVLSELRKAGQLKKHEELVDKMVDRGFVSRSL 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g3727 529 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 12 528 - -
Sto9g3727 529 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 246 280 IPR002885 -
Sto9g3727 529 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 351 385 IPR002885 -
Sto9g3727 529 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 281 315 IPR002885 -
Sto9g3727 529 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 421 455 IPR002885 -
Sto9g3727 529 Pfam PPR repeat 388 418 IPR002885 -
Sto9g3727 529 Gene3D Tetratricopeptide repeat domain 448 522 IPR011990 GO:0005515
Sto9g3727 529 MobiDBLite consensus disorder prediction 32 51 - -
Sto9g3727 529 Gene3D Tetratricopeptide repeat domain 228 327 IPR011990 GO:0005515
Sto9g3727 529 Gene3D Tetratricopeptide repeat domain 109 227 IPR011990 GO:0005515
Sto9g3727 529 Gene3D Tetratricopeptide repeat domain 329 447 IPR011990 GO:0005515
Sto9g3727 529 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 177 211 IPR002885 -
Sto9g3727 529 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 386 420 IPR002885 -
Sto9g3727 529 Pfam PPR repeat family 246 294 IPR002885 -
Sto9g3727 529 Pfam PPR repeat family 182 225 IPR002885 -
Sto9g3727 529 Pfam PPR repeat family 420 468 IPR002885 -
Sto9g3727 529 Pfam PPR repeat family 315 364 IPR002885 -
Sto9g3727 529 PANTHER CHLOROPLAST RNA PROCESSING 1-LIKE PROTEIN 12 528 - -
Sto9g3727 529 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 456 490 IPR002885 -
Sto9g3727 529 SUPERFAMILY TPR-like 213 480 IPR011990 GO:0005515
Sto9g3727 529 TIGRFAM PPR: pentatricopeptide repeat domain 248 282 IPR002885 -
Sto9g3727 529 TIGRFAM PPR: pentatricopeptide repeat domain 283 317 IPR002885 -
Sto9g3727 529 TIGRFAM PPR: pentatricopeptide repeat domain 389 422 IPR002885 -
Sto9g3727 529 TIGRFAM PPR: pentatricopeptide repeat domain 181 212 IPR002885 -
Sto9g3727 529 TIGRFAM PPR: pentatricopeptide repeat domain 423 457 IPR002885 -
Sto9g3727 529 TIGRFAM PPR: pentatricopeptide repeat domain 353 387 IPR002885 -
Sto9g3727 529 TIGRFAM PPR: pentatricopeptide repeat domain 459 492 IPR002885 -
Sto9g3727 529 TIGRFAM PPR: pentatricopeptide repeat domain 318 351 IPR002885 -
Sto9g3727 529 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 316 350 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g3727 Sto-Chr9 35521910 35523499 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g3727 137 526 Glycosyltransferase AT1G05670 24.413 1.08e-45 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g3727 - - zju:107422771 775.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g3727 9 35521910 35523499 Sto9g3727 9 35521910 35523499 ECH