Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g3725 ATGCTCCCACTCCACTCTTGTACATGTTGCCGCTCTTCCGCAGCAAAAGCATTTCGATCCTCACCTTCTCTCTTCCCCTTCTCCGATGGGCGTTGGAACTGCAAGTTTCCTTTTAGCGCTGCCAGAACAGCTGGACCCAGTTCAAGCTTCACTGGAGACTCCGACTCCGATGGAGATCAAGAATCGGTGGACAGTAAGAGGACGAATTACGCCGGCGTACGGTTGGAGGAGACTGTCGATATTAAGTCAGGAAAACTCAGACTCGATTCTTGGATCTCTTATCGCATCAACGGAATAAGTAGGGCTCGCGTGCAGTCAAGTATTAGAGCAGGGCTCGTTCATGTCAACGGCCGTGTTGTTGATAAGGTTTCTTTCAACGTCAAAGCTGGGGATAAGATCAATTGCACAATCTCGGAGTTGCAACAGTTGAGGGCTGAGCCAGAACATATGACATTGGATATAGTTTATGAAGATGATCATGTACTAGTTATTAATAAACCTGCACACATGGTTGTGCATCCGGCACCTGGAAATACGTCTGGCACACTTGTCAATGGCATTCTTCACCATTGCAGCCTTCCAAATGTTGAAGTTTTTAATAAAGAAGCTCTTTCAGAGACTGACGATTCTGATGATGATTTTGATAGCTTATGTATAAATCAAAGTTCTAGTGATGGGCTAGAATCACATTCCAGCATGCGTGAAGCATCAGTCCGGCCAGGGATTGTGCACAGGCTGGACAAAGGCACCAGTGGGTTGCTCGTTGTTGCGAAGGATGAACAATCCCACCTCCATTTAGCAGAACAATTCAAGCTACGTACCATCAAGAGGGTGTATGTCAGTCTTACTACTGGGGTACCCGATCCAGCTGCTGGGCGTGTTGAGGTCCCAGTTGGTCGTGATCCTAATAACCGGGTTCGAATGACTGCTATAGCTGGATCAGTTAATTCTAGAAGGGCCCGTTATGCTGCTAGTAGGTACAAAGTAATTGAGATACTTGCCGAGGGTGCTTGTGCAATGGTCGAGTGGAGGTTAGAAACTGGACGCACACACCAGATCCGTGCACATTCAAAGTATCTTGGGGTTCCTCTGCTGGGTGATGAGGTGTACGGAGGGACGAAGAGCATGGTATTGTCACTGCTTCAGCCAAGAACACCACCGAGCATGCGTGGCAACATATTGCAAATGGTCTCCAGGCTTGATAGACCTTGCCTTCATGCTTTAACTCTCGGGTGA 1236 0.4782 MLPLHSCTCCRSSAAKAFRSSPSLFPFSDGRWNCKFPFSAARTAGPSSSFTGDSDSDGDQESVDSKRTNYAGVRLEETVDIKSGKLRLDSWISYRINGISRARVQSSIRAGLVHVNGRVVDKVSFNVKAGDKINCTISELQQLRAEPEHMTLDIVYEDDHVLVINKPAHMVVHPAPGNTSGTLVNGILHHCSLPNVEVFNKEALSETDDSDDDFDSLCINQSSSDGLESHSSMREASVRPGIVHRLDKGTSGLLVVAKDEQSHLHLAEQFKLRTIKRVYVSLTTGVPDPAAGRVEVPVGRDPNNRVRMTAIAGSVNSRRARYAASRYKVIEILAEGACAMVEWRLETGRTHQIRAHSKYLGVPLLGDEVYGGTKSMVLSLLQPRTPPSMRGNILQMVSRLDRPCLHALTLG 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g3725 411 PANTHER RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE D 82 410 - -
Sto9g3725 411 Gene3D Pseudouridine synthase 143 411 - -
Sto9g3725 411 Pfam RNA pseudouridylate synthase 160 357 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Sto9g3725 411 ProSiteProfiles S4 RNA-binding domain profile. 86 159 - -
Sto9g3725 411 MobiDBLite consensus disorder prediction 42 67 - -
Sto9g3725 411 Pfam S4 domain 87 133 IPR002942 GO:0003723
Sto9g3725 411 Gene3D - 71 142 IPR036986 GO:0003723
Sto9g3725 411 SUPERFAMILY Pseudouridine synthase 146 410 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Sto9g3725 411 PANTHER MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE 82 410 - -
Sto9g3725 411 CDD PseudoU_synth_RluA_like 161 411 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Sto9g3725 411 SUPERFAMILY Alpha-L RNA-binding motif 85 173 - -
Sto9g3725 411 MobiDBLite consensus disorder prediction 42 56 - -
Sto9g3725 411 CDD S4 87 165 - -
Sto9g3725 411 ProSitePatterns Rlu family of pseudouridine synthase signature. 243 257 IPR006224 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Sto9g3725 411 SMART s4_6 86 144 IPR002942 GO:0003723
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g3725 K06180 - gmx:100810383 560.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g3725 9 35515277 35518443 Sto9g3725 9 35515277 35518443 ECH