Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g3657 ATGATGAACGCAAGCCTCTACGGTTCGATTATTCGGCCGTCGCCTGTAATTCACGAACTCTATGTTCCATGCATTACTCcaccaaaccctaatcgctTTAGGAAGGACTCCAAGTGCGTTTCCTCCAGACTCAGTACCTCTGTTCTTCTGCCACAACAGCTTGGACTCGTGTCCTCTGATGACGTTTCATTGCAGAACCCAGTGATTGACACCCCCGAACCAGTtcaagaaggagaagaagaagcagtCCCTGGTATAGCCAGTGAAGCTTCTCACTCAACATCAGAAGATAAAGCTTCCGGTTCGTCGACTAAActtaagaagaagaaagatgagCAGGACAACTACGAGAATAGGTTCAAGCTCCGGAATGGAAGGGAGGTTTTTGAAGAAAAAGCCTATCTAGTAGGTGTTGAGTGCAAAGGTGATACACAGAATTATTTTGGTATAGAAGAATCTATCAATGAACTGGCACAGCTAGCTGACACTGCTGGATTGATGGTTGTTGGCTCCACTTACCAAAAGCTTGCTTCTCCAAACCCCAGAACATACATTGGATCTGGCAAGGTTTCAGAGATTAAGAGTGCAATTCATGCATTGGGTGTCGAAACTGTGATATTTGATGATGAGCTGTCAGCTGGGCAATTGCGTAACTTGGAAAAGGCATTTGGTGGAGATGTGAGAGTCTGTGACCGCACTGCCCTCATCCTTGATATATTTAACCAGAGAGCAGCAACACATGAAGCATCTCTACAGGCAATTTTTTTAGTTGCATTGGCACAAATGGAGTACCAGTTACCTCGACTAACAAAAATGTGGACTCACCTTGAACGGCAAGCTGGAGGAAAGGTGAAGGGAATGGGTGAAAAACAAATAGAAGTGGACAAGCGTATTTTACGGAATCAAATTGGTATCCTTAGGAAAGAGCTAGAAACTGTTAGGAAACATCGAAAACAGTACCGTAACAGGCGATTCTCAGTACCTGTGCCTGTAGTATCCTTGGTTGGGTACACAAATGCTGGTAAGAGTACGCTTTTAAATCAATTAACAGGAGCAAATGTTCTTGCTGAGGATAAATTGTTTGCAACTCTCGATCCAACTACAAGGAGGGTACAGATGAAAAATGGGAAGGAGTTTCTCCTAACAGATACTGTTGGTTTTATTCAGAAATTACCTACTACACTGGTCGCGGCTTTCAGGGCTACACTGGAGGAGATATCAGAGTCATCTCTTTTGGTGCATGTGGTTGATATCAGTCATCCCCTGTCTGAGCAACAGATAGATGCAGTGGACAAAGTTCTTTCAGAACTAGATGTGTTATCAATTCCAAGATTGATGGTCTGGAACAAGGTTGATAAGTCCAGCGATCCCCAAAAAGTCAGGCTAGAAGCTGAGAAAAGAGATGATGTAATATGCATATCTGCTTTGAATGGGGATGGCTTACCTGAATTTTGCAATGCAGTTCAAGAAAAACTAAAGGACTCCATGGTATGGGTGGAAGCTTTGCTCCCATTTGATAAAGGGGACCTTCTTAGCACGATACATCAGGTTGGAATGGTTGAGAAATCTGAATATACAGAACAAGGGACATTTATCAGGGCACATGTTCCCCTGCGTTTTGCAAGATTGCTTACACCCATGAGGCAGCTATGTGCATCCCGACCTTAA 1668 0.4209 MMNASLYGSIIRPSPVIHELYVPCITPPNPNRFRKDSKCVSSRLSTSVLLPQQLGLVSSDDVSLQNPVIDTPEPVQEGEEEAVPGIASEASHSTSEDKASGSSTKLKKKKDEQDNYENRFKLRNGREVFEEKAYLVGVECKGDTQNYFGIEESINELAQLADTAGLMVVGSTYQKLASPNPRTYIGSGKVSEIKSAIHALGVETVIFDDELSAGQLRNLEKAFGGDVRVCDRTALILDIFNQRAATHEASLQAIFLVALAQMEYQLPRLTKMWTHLERQAGGKVKGMGEKQIEVDKRILRNQIGILRKELETVRKHRKQYRNRRFSVPVPVVSLVGYTNAGKSTLLNQLTGANVLAEDKLFATLDPTTRRVQMKNGKEFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLSEQQIDAVDKVLSELDVLSIPRLMVWNKVDKSSDPQKVRLEAEKRDDVICISALNGDGLPEFCNAVQEKLKDSMVWVEALLPFDKGDLLSTIHQVGMVEKSEYTEQGTFIRAHVPLRFARLLTPMRQLCASRP 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g3657 555 CDD HflX 289 492 IPR030394 GO:0005525
Sto9g3657 555 Pfam GTP-binding GTPase N-terminal 151 240 IPR025121 -
Sto9g3657 555 Gene3D - 244 315 - -
Sto9g3657 555 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 330 503 IPR027417 -
Sto9g3657 555 Coils Coil 555 555 - -
Sto9g3657 555 PRINTS GTP1/OBG GTP-binding protein family signature 332 352 IPR006073 GO:0005525
Sto9g3657 555 PRINTS GTP1/OBG GTP-binding protein family signature 399 417 IPR006073 GO:0005525
Sto9g3657 555 Coils Coil 303 323 - -
Sto9g3657 555 Pfam HflX C-terminal domain 463 530 IPR045498 -
Sto9g3657 555 PANTHER GTP-BINDING PROTEIN HFLX 104 540 IPR016496 GO:0005525
Sto9g3657 555 TIGRFAM GTP_HflX: GTP-binding protein HflX 133 492 IPR016496 GO:0005525
Sto9g3657 555 ProSiteProfiles HflX-type guanine nucleotide-binding (G) domain profile. 330 496 IPR030394 GO:0005525
Sto9g3657 555 Pfam 50S ribosome-binding GTPase 332 450 IPR006073 GO:0005525
Sto9g3657 555 Pfam GTP-binding GTPase Middle Region 243 324 IPR032305 -
Sto9g3657 555 TIGRFAM small_GTP: small GTP-binding protein domain 331 484 IPR005225 GO:0005525
Sto9g3657 555 Gene3D - 144 243 IPR042108 -
Sto9g3657 555 PANTHER GTP-BINDING PROTEIN 6-RELATED 104 540 - -
Sto9g3657 555 Gene3D - 329 497 IPR027417 -
Sto9g3657 555 MobiDBLite consensus disorder prediction 61 113 - -
Sto9g3657 555 Hamap GTPase HflX [hflX]. 154 521 IPR016496 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g3657 Sto-Chr9 35050735 35055632 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g3657 K03665 - zju:107420493 827.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g3657 9 35050735 35055632 Sto9g3657 9 35050735 35055632 ECH