Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g3517 ATGATCCCAATTACTTCCGTTGAGTTGAACTATATAGTCTTCCGTTACCTTCACGAATCAGGTTTTACTCATTCCGCATTTACTTTTGGGTATGAGGCAGGGATTGATAAAACCACAATTGATGGTAATTTAGTTCCGCCAGGTGCTCTTGTGACATTCATACAAAAAGGAATTCAATATATTGAGCTAGAAGCAAACTTGAGTGGCGACCTCAAGCTGATTGGTGTCCAGAGTGATGTAGATACGGATGAGGATTTCTCATATCTTCAACCTCTTgaccttatcacaaaggacccATATGAACTACACAATATAGTTAAAGCCAAAAAGGAAAATCTACGTCAGAATAAGTCTGAAGCAAATAACAAGGTGAATGATTTTAGTCAAGACGCTGCAAAGGAACATGCTCTTGAAAAGGACaaagagagaaaggaaagggaaaatgaacatgaaattgataaaacaaAACTAGAGAAACAAAGAGAGCAAGAAAAGGGTGAATATAAAGAAATCCAACATCCAGATCAAAATGATGCAGAGAAGCATGAAGATAAAATTATAGCTGAAAATATAGAAAATGGAACTTGTGGAGGGCCAGAGCCAATGGAGATCTCTCAAAGCTGCATAATACCTCCTAGTGACATTCCAACTTGTGATGTAAAAGTTTTGGAAGGTCATACCTCTGAGGTTTTTGCTTGTGCATGGAATTCATCAGGTTCACTTCTTGCATCTGGATCTGGAGATTCAACAGCTCGGATTTGGAAAATTGCAGAAGGACCTTTTAACACTAGTGTACTAAATGAACCTGTAAAAGTTGTGGTACTGAGGCACTTTAAAGGAAGAACCAATGAGAAAAGCAAGGATGTGACGACACTTGACTGGAATGGGGATGGAACATTGCTGGCAACTGGTTCTTATGATGGGCAAGCAAGAATATGGAGTAGAGATGGAGAGTTGAGGAGTACATTAAACAAACATAAAGGTCCAATCTTTTCTCTGAAGTGGAACAAGAAGGGCGATTATCTTCTTAGTGGCAGTGTAGATAAAACTGCTATTGTTTGGGACATAAAGACTGGGGAATGGAAGCAACAATTTGAATTTCACTCTGCTCCTACTCTTGATGTTGATTGGCGAAACAATGTCTCATTTGCAACATGTTCCACTGATAACATGATATATGTATGCAAAATTGGAGAGAATCGGCCAATCAAAACTTTCTCAGGGCATCAGGGAGAAGTCAATGCCATCAAATGGGATCCAACAGGCTCTCTTCTGGCTTCTTGCTCAGATGATCACACTGCCAAAATTTGGAGTCTGAAGCAGGACAGGTTTTTGCATGATTTGAAGGAGCATGTTAAGGAGATATATACCATTCGGTGGAGTCCTTGTGGGCCTTGTACCAACAATCCCAATCAGTCATTAGTTCTAGCAAGTGCCTCCTTCGACTCTACAGTAAAGCTGTGGGATGTGGAACTGGGAAAAGTACTCTACAGCTTAAATGGTCACAGGGATCCTGTATATTCCGTTGCGTTCAGCCCTAATGGTGAGTATCTGGCTAGTGGCTCCATGGATAAATGCATGCACATATGGTCTGTGAAGGAGGGAAAACTCGTGAAAACATATACTGGAAATGGTGGGATCTTTGAAGTTAGTTGGAACAAAGACGGTGATAAAGTTGCTGCTTGTTTTTCAAACAATATTGTTTGTGTCTTGGATTTTCGAATGTAG 1728 0.3883 MIPITSVELNYIVFRYLHESGFTHSAFTFGYEAGIDKTTIDGNLVPPGALVTFIQKGIQYIELEANLSGDLKLIGVQSDVDTDEDFSYLQPLDLITKDPYELHNIVKAKKENLRQNKSEANNKVNDFSQDAAKEHALEKDKERKERENEHEIDKTKLEKQREQEKGEYKEIQHPDQNDAEKHEDKIIAENIENGTCGGPEPMEISQSCIIPPSDIPTCDVKVLEGHTSEVFACAWNSSGSLLASGSGDSTARIWKIAEGPFNTSVLNEPVKVVVLRHFKGRTNEKSKDVTTLDWNGDGTLLATGSYDGQARIWSRDGELRSTLNKHKGPIFSLKWNKKGDYLLSGSVDKTAIVWDIKTGEWKQQFEFHSAPTLDVDWRNNVSFATCSTDNMIYVCKIGENRPIKTFSGHQGEVNAIKWDPTGSLLASCSDDHTAKIWSLKQDRFLHDLKEHVKEIYTIRWSPCGPCTNNPNQSLVLASASFDSTVKLWDVELGKVLYSLNGHRDPVYSVAFSPNGEYLASGSMDKCMHIWSVKEGKLVKTYTGNGGIFEVSWNKDGDKVAACFSNNIVCVLDFRM 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g3517 575 Pfam WD domain, G-beta repeat 493 531 IPR001680 GO:0005515
Sto9g3517 575 Pfam WD domain, G-beta repeat 320 355 IPR001680 GO:0005515
Sto9g3517 575 Pfam WD domain, G-beta repeat 445 489 IPR001680 GO:0005515
Sto9g3517 575 Pfam WD domain, G-beta repeat 401 438 IPR001680 GO:0005515
Sto9g3517 575 Pfam WD domain, G-beta repeat 275 314 IPR001680 GO:0005515
Sto9g3517 575 Pfam WD domain, G-beta repeat 220 255 IPR001680 GO:0005515
Sto9g3517 575 Pfam WD domain, G-beta repeat 535 569 IPR001680 GO:0005515
Sto9g3517 575 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 282 314 - -
Sto9g3517 575 ProSiteProfiles Trp-Asp (WD) repeats profile. 282 314 IPR001680 GO:0005515
Sto9g3517 575 ProSiteProfiles Trp-Asp (WD) repeats profile. 323 364 IPR001680 GO:0005515
Sto9g3517 575 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 406 440 - -
Sto9g3517 575 SMART Lish 5 37 IPR006594 GO:0005515
Sto9g3517 575 Gene3D - 2 67 - -
Sto9g3517 575 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 499 536 - -
Sto9g3517 575 ProSiteProfiles Trp-Asp (WD) repeats profile. 499 540 IPR001680 GO:0005515
Sto9g3517 575 Pfam LisH 8 33 IPR006594 GO:0005515
Sto9g3517 575 Gene3D - 212 575 IPR015943 GO:0005515
Sto9g3517 575 ProSiteProfiles Trp-Asp (WD) repeats profile. 406 447 IPR001680 GO:0005515
Sto9g3517 575 PANTHER F-BOX-LIKE/WD REPEAT-CONTAINING PROTEIN TBL1XR1 ISOFORM X1 4 575 - -
Sto9g3517 575 ProSiteProfiles LIS1 homology (LisH) motif profile. 5 37 IPR006594 GO:0005515
Sto9g3517 575 SMART WD40_4 441 489 IPR001680 GO:0005515
Sto9g3517 575 SMART WD40_4 399 438 IPR001680 GO:0005515
Sto9g3517 575 SMART WD40_4 358 396 IPR001680 GO:0005515
Sto9g3517 575 SMART WD40_4 216 255 IPR001680 GO:0005515
Sto9g3517 575 SMART WD40_4 534 572 IPR001680 GO:0005515
Sto9g3517 575 SMART WD40_4 271 314 IPR001680 GO:0005515
Sto9g3517 575 SMART WD40_4 492 531 IPR001680 GO:0005515
Sto9g3517 575 SMART WD40_4 316 355 IPR001680 GO:0005515
Sto9g3517 575 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 323 360 - -
Sto9g3517 575 ProSiteProfiles Trp-Asp (WD) repeats profile. 223 264 IPR001680 GO:0005515
Sto9g3517 575 Coils Coil 103 130 - -
Sto9g3517 575 MobiDBLite consensus disorder prediction 135 181 - -
Sto9g3517 575 ProSiteProfiles Trp-Asp (WD) repeats profile. 448 498 IPR001680 GO:0005515
Sto9g3517 575 SUPERFAMILY WD40 repeat-like 216 573 IPR036322 GO:0005515
Sto9g3517 575 Coils Coil 134 167 - -
Sto9g3517 575 ProSitePatterns Trp-Asp (WD) repeats signature. 342 356 IPR019775 -
Sto9g3517 575 ProSitePatterns Trp-Asp (WD) repeats signature. 476 490 IPR019775 -
Sto9g3517 575 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 223 256 - -
Sto9g3517 575 CDD WD40 220 531 - -
Sto9g3517 575 PRINTS G protein beta WD-40 repeat signature 242 256 IPR020472 -
Sto9g3517 575 PRINTS G protein beta WD-40 repeat signature 342 356 IPR020472 -
Sto9g3517 575 PRINTS G protein beta WD-40 repeat signature 476 490 IPR020472 -
Sto9g3517 575 PANTHER WD40 REPEAT PROTEIN 4 575 IPR045183 GO:0003714|GO:0016575
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g3517 Sto-Chr9 34317408 34322280 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g3517 403 573 Miscellaneous Gene Families AT5G08390 30.636 6.83e-18 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g3517 K04508 - gmx:100783690 935.636
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g3517 9 34317408 34322280 Sto9g3517 9 34317408 34322280 ECH