Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g3513 ATGCAGGGGAGTGGTGCTAATCCCGGGGCTATGCGATCGCAAGATTCTTTGGTGGGGTCTGATAATTATGGGTCTACCGGATACTCTTCGAATTATGATTGGTTTCTCACCTCAGACGATTCGCGTTTCACGTCGAACAAAGATGACGAGTCTTGCTCCGAATTGCAACAAAATCCCCCTTCTATCTTGTCAGGAAACAGATTGAATCTTACGGGGTTTAATGTCAATGGTAGTCGTCCCCACTGCTTGCAGCAGCCTCATCCCGTCAGTCATTCTCGGGGGAGTATACTGTTGTTAGCAAAGGATAAATATGGGTGTCAGCTTTTGCAGGAGATGTTAATGAAAGGCTTAAAAACCGAGGACTTTTCTCGGATTTTCTTGGAGCTGATTGGTCATGTGAACGAGTTGGCGCAGGATCCATTTGGGAATTATCTGTTTCAGACGCTGGTGGAAGTCTGCACTGAAGAGCAGAGGACTCAAATCATTCGAGTGATTACCTCAAGCGATTTTCAGTTTGTCCATATTTGTCTCAACTTTCATGGAAGCCGCGCTGCGCAGAAGTTATTAGAGCATGTCACAACCCAGAATCAACAAACTATTCTTATTTTGGCTCTCATCCCTGGAGTAGTTGCATTGACTAAGGATTTTAATGGTCATCTTGTGATTCTGCAATGTTTAAAGCATTTCTCGGACCAAAAAACAAAGCAATTCGTTAACCATTCCAAGGGAGTAACCAAAGGTTACCTAATATCCATTATCGCACAACTTGCCCTGGACTTAGCAAGAGATCGTTATGGCAACTATGTGGTGCAACATTTAATTTCTTTGAGAATAGATACAGTTGCAAAAACCATACTGAGGAAGCTTCAAGGGAATTTTGTATCTCTTTCCTGCAATAAATATAGTAGTAATGTTGTGCAGAAGCTCATAGAATCTGGAGAAGAGTACTGTCGTACACAAATAATTTTGGAGTTGCTTCAAGATACAAATGGTCCGATGCTTCTTGTGGATCCATATGGAAATTATGTCATCCAATCAGCACTAATGGCATCCAAGGGACGCATTCGTGATGCAATACTGAGACTGATTGAACTAAATTCCCTGATGATGAGCATCAACATATTTGGGAAAAAGATACTTGCTCAATTTGACAAGGCCAAATACGACAAATAA 1173 0.4177 MQGSGANPGAMRSQDSLVGSDNYGSTGYSSNYDWFLTSDDSRFTSNKDDESCSELQQNPPSILSGNRLNLTGFNVNGSRPHCLQQPHPVSHSRGSILLLAKDKYGCQLLQEMLMKGLKTEDFSRIFLELIGHVNELAQDPFGNYLFQTLVEVCTEEQRTQIIRVITSSDFQFVHICLNFHGSRAAQKLLEHVTTQNQQTILILALIPGVVALTKDFNGHLVILQCLKHFSDQKTKQFVNHSKGVTKGYLISIIAQLALDLARDRYGNYVVQHLISLRIDTVAKTILRKLQGNFVSLSCNKYSSNVVQKLIESGEEYCRTQIILELLQDTNGPMLLVDPYGNYVIQSALMASKGRIRDAILRLIELNSLMMSINIFGKKILAQFDKAKYDK 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g3513 390 SMART pum_5 326 361 IPR001313 GO:0003723
Sto9g3513 390 SMART pum_5 288 323 IPR001313 GO:0003723
Sto9g3513 390 SMART pum_5 167 202 IPR001313 GO:0003723
Sto9g3513 390 SMART pum_5 128 163 IPR001313 GO:0003723
Sto9g3513 390 SMART pum_5 252 287 IPR001313 GO:0003723
Sto9g3513 390 SMART pum_5 91 127 IPR001313 GO:0003723
Sto9g3513 390 SMART pum_5 204 239 IPR001313 GO:0003723
Sto9g3513 390 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 27 383 - -
Sto9g3513 390 ProSiteProfiles Pumilio RNA-binding repeat profile. 251 287 IPR001313 GO:0003723
Sto9g3513 390 ProSiteProfiles Pumilio RNA-binding repeat profile. 288 324 IPR001313 GO:0003723
Sto9g3513 390 ProSiteProfiles Pumilio RNA-binding repeat profile. 128 163 IPR001313 GO:0003723
Sto9g3513 390 Pfam Pumilio-family RNA binding repeat 171 203 IPR001313 GO:0003723
Sto9g3513 390 Pfam Pumilio-family RNA binding repeat 292 326 IPR001313 GO:0003723
Sto9g3513 390 Pfam Pumilio-family RNA binding repeat 132 166 IPR001313 GO:0003723
Sto9g3513 390 Pfam Pumilio-family RNA binding repeat 96 130 IPR001313 GO:0003723
Sto9g3513 390 Pfam Pumilio-family RNA binding repeat 336 360 IPR001313 GO:0003723
Sto9g3513 390 Pfam Pumilio-family RNA binding repeat 258 274 IPR001313 GO:0003723
Sto9g3513 390 ProSiteProfiles Pumilio RNA-binding repeat profile. 325 361 IPR001313 GO:0003723
Sto9g3513 390 MobiDBLite consensus disorder prediction 1 22 - -
Sto9g3513 390 Gene3D - 87 240 IPR011989 -
Sto9g3513 390 PANTHER PUMILIO HOMOLOG 15 27 383 - -
Sto9g3513 390 Gene3D - 241 389 IPR011989 -
Sto9g3513 390 SUPERFAMILY ARM repeat 90 382 IPR016024 -
Sto9g3513 390 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 64 387 IPR033133 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g3513 Sto-Chr9 34295097 34297632 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g3513 - - lja:Lj0g3v0249229.1 313.923
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g3513 9 34295097 34297632 Sto9g3513 9 34295097 34297632 ECH