Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g3499 ATGGCCACAGCTGAGCAGCCTCCCAAGAAGCGGAGGCTATACGAGCCTTTACCGGAATCATCACCTTTTCCACCGCCTTCCACCGAAGCACTTACATCTGACCCTCCctctcccaaaaccctaacccaccCCCACTCCTCTGTTCCTCCCCCTGCAACTCCTCCATTGTCTCAGGAGCAGATTCTCGTCAAGCGAAGAAACAAGAATGAAATTCGGACTGTTTACGATTGCTACAAGCGGATTAAATTTGGCTTGTCTCAGAAAGATGGACCTTTCATGTCTGACCTTGAACGAAATtatctctctctcatttctGCTTCCAGAGGTTGTATGAGTGTACAACGAATTGTGGCTGATTTTATTCCTCGATATGCTTGTCACTTTCCAACTGCCTTGGAAGCTGCAGCTAAAGGTGTCATTAATATGCATAATTGGAGTTTGGCATTGATCAACAAAGGAGAAGATTATGATGGTATTGCATTTGAAACTGCTAAAGCATGTATTTTGGGCCTGGCTGATATTTGTTGTGCGGCTTCTTCAGTGGCACCAACATCATCTGTAATTAAAGGAATATGCTCTGCAGTTTTTCAAAATGTGCTAACCTTCTTTGTATCCATATTTGATGGAAAGGATATCTTCTATATGGTTGATAAGAATTTCCCGAGGATGCAAGATTCCCCTGAGGTCTTTTCTGAGCTAAAGCAAGATATTCTAGATCAAGATGAAACTTCATTGGCTAAATTGCCCAAGCTTTGTGCATTATGTGTGCTTTGGATATTCTTCTCCTGTCCAAAATATTTTCTTGCAGCTTGTTTGGACCTCTTAGGCTCCACTGCAAATGAGGGAGCTTCTCAAGGCGGGCAGTATATTCTGAGCCAGGTGACTAGCTGGCTTGATGATGATGTGGTTCACCTTTTGGATAGAGCAAATGATGTACCTAAATCATGTACAGGTCCTACTGGAACAAGCATCAGAGGCAATGAGGTGGCAAAGGAGCTTTCAACTGATAACTGTCATGTTTCAGAGGGCGATGCATCTGTTCAAAATAGCTGCTTGCTCAAGCTGGTTTTAAACAAAGATCCCTCATTGCAGAAGTGGATGCTGTATAGGTATATGGAAGATTGTCAACTAGATAGTGATGAAGATAAATCTGATTCTTTGATTTGCCTCAATAGGAGTCATGTGGTGCCTAGGATATCTGAGGAACATGAAACCCAAATTGGTGAGCCATCTGGAAAAGGTAGCAATTTAAGAGTTCATGTTGGTTCATCTGATGATGGATTTACTGATAAGGTTTCAGGTAAATATGTGAATGCAAATAGCTCTGCTGTTAATCTTGATTCTGAATCCTTATCAAAAGTGTGTCCTAATTCTGATAATGGAGTCTCCAGGCCTATTTTCCCTGAGATAGGGATGCAAGGAGATATGCCCCAAGTTAGATGTTCTGCACCCAGTGACTTAATGAGCCACCAGATACCCTCACCTGCAATAAGACCGCCAGTAGAATTTAGGAGTAATTCTTTTGAAGGTAGAATTGATATcccaaatattgaaaaaaatcagGTTTCAAATATGGATTTCAATTTACCTCCATTGAGATCTTCAAGTGGAGGCGTTTGTAATATCCAGGCTTCGCCTAAGCATCATTTAATGTCTCCAATCGCGAGAAATCAAACTGTCTGGTGTTGTGATGGGGATCCTGCTTCCATGGATATTGTCTCTGCTTCAAAACAGCTCTGGGTAGGTTATGTAGGGCTTGACATCTCTGAAAATCATATGAGGTTTCAGTTAGAGAGGTTTGGTCCAAtcgaaaaattctttttcttcccAGTTAAAGGGTTTGCCTTGGTTGAGTACAGAAGCATCATAGATGCCATAAAGGCTCGAGATTATTTGCCTGGAAGTTTTCCTTGTCGAGTAAAATTCATGGATATAGGATTTGGAACTAGAGGTTCTATAAACGGTGTCGCAGTTGGTTTTAGCTCTCTTATCTATATTGGAAATGTTTCCAGTCAGTGGGCCAAGGATGAGATCCTGCATGAATCAAGGAAAGTAATTCATAAGGGTCCCCTCATGGTTACTGATCTTAACTGTGAGCGTGCATTACTTATAGAATTTGAAACTCCTGAAGAAGCTGCCTCAGTGATGTTGCATCTGAGACAGCTCCGAATAGAGAGAAGTAATTATCACCAATCTTTTGGGCCAGGGCCTACTCATATGGATGGTGCAAGACATGTGCCCACCCCTTCCCATCTTGACCTTAAATCCAACATCCCACCAAACTTTTCAAATGGTATTGCTGGATCACCTCATTCTGGAACATTGCCCGAGAGCCCTGCTGACAGCAATCGAATGAGGATGTCTCACTTGTCTTCCTTGCTTGCGTCATTGCGTGCAAAATATAACATTAGTCAAAATATAGGCTACATTGACAATTATGCAAGTGGAAATAGTCGCACTTCTTCCTTGCGAGAGGAAGATACAGTGCCATCCAGTACCCTGTGGATAAATATTCCGAGTAATAGCTCTTTTTTCCTTGCAGAAGATGATCTATTAGCCATTTTCAATTTGGCCTTGGGAAACTTTGGTTCCATTGTACGATTGACACAAGCAAACATGCAGATGGGATGTGGTTGGTTTGTTGAATGCAGCACTGTTGATGCTGCAGTTTCTGTCCTGAAGAATCTTCGTGGTTGTCCTGGAATGTTCTTCCAGATAGAATTTAGCTCGGTAATCGGTATTATCATTGTTCTCCCATCTTTGTACAGCCAACATGGAATTCAGAATGCTGCAGCAGTTTCAATTAAAACCGAAAACAACTCTTTTGAGCTTGTATCACCGAGGTTAAAATCAGAGAATCAGGGTAATAGTGTCTGTGCTGCACCTCTGTTTCAGTCAAACTGGAACTTTTCTGGTTCCAGGGAGATGTTGGAAGTTGGGGCAAGGAAGCCTGATGGTTATGACAACTTGCCAGCTGATCCTCATCAAGGAGGCAATGCTCCACACATTCTCTCTGCAACACAAGGGCCTTCAATTCCACCACCACAACAAATTCAGTCAGCTCCTTTCATTCGCCCTGTGTATGTTCCTCCAAACGGTTCATGGGATGCTCGGGGATTTAATAATCATTTACCTGCCAACCAATTCAAGACAGGAGTGATGCCTAATAACTTTCATGGGAATGCTGTTGTAACTCCTTTCATACCAGCTTCGGTCACTCCGCTTGCTCAAATACAGGGAACTTCAATGCAGCCTTATAACCAACCAATCCCTCCACCGATTGTACCACCGCCTTTATCATCTTTGCCACCACCACGACCTCCATCGCCCCCACCTTTACCCCATACTCAGCCACCTTTGGTTCCTCCACCACCCGGTTCTCCTCCTCCACCCCCACCTCCACCATTGCCTGTCCAAGAATCACCTGATATAGAAAGTTTGGGGAAGTCTCTGCAATATCAGTGGCAGGGGGTTCTGTGTAAAAGTGGTGTGATCTACTGTACAATATATGCGTGTAGAACAGATTCAAATACTTGCAGATATTCAAATACCACTCCTGAGCCTTCTGAATGGCCTGCAAAATTAGACATGACTAAACGCACAGATCTCCGACATGTGAAATCAACATTTGCTAGTACTCCACAACATAGAAGGGAAGTGTGTCGTTTAATCCCATCTTCCACTAATGACTACAAAGGGTTTCAGGATTTTATATCATACTTAAAGCAAAGGGATTGTGCCGGAGTTATTAAAATACCCGCTGCAAAATCCGTATGGGCAAGGCTTCTTTTTATACTCCCCCACACACCTGAAACATGCTCTATGCTTTCCATTGCACCAGATCCATCTGATTGCCTCATTGGTTTGGTTCTGCCAAAAGAAACGAACTTCGAATGGATATGA 3903 0.421 MATAEQPPKKRRLYEPLPESSPFPPPSTEALTSDPPSPKTLTHPHSSVPPPATPPLSQEQILVKRRNKNEIRTVYDCYKRIKFGLSQKDGPFMSDLERNYLSLISASRGCMSVQRIVADFIPRYACHFPTALEAAAKGVINMHNWSLALINKGEDYDGIAFETAKACILGLADICCAASSVAPTSSVIKGICSAVFQNVLTFFVSIFDGKDIFYMVDKNFPRMQDSPEVFSELKQDILDQDETSLAKLPKLCALCVLWIFFSCPKYFLAACLDLLGSTANEGASQGGQYILSQVTSWLDDDVVHLLDRANDVPKSCTGPTGTSIRGNEVAKELSTDNCHVSEGDASVQNSCLLKLVLNKDPSLQKWMLYRYMEDCQLDSDEDKSDSLICLNRSHVVPRISEEHETQIGEPSGKGSNLRVHVGSSDDGFTDKVSGKYVNANSSAVNLDSESLSKVCPNSDNGVSRPIFPEIGMQGDMPQVRCSAPSDLMSHQIPSPAIRPPVEFRSNSFEGRIDIPNIEKNQVSNMDFNLPPLRSSSGGVCNIQASPKHHLMSPIARNQTVWCCDGDPASMDIVSASKQLWVGYVGLDISENHMRFQLERFGPIEKFFFFPVKGFALVEYRSIIDAIKARDYLPGSFPCRVKFMDIGFGTRGSINGVAVGFSSLIYIGNVSSQWAKDEILHESRKVIHKGPLMVTDLNCERALLIEFETPEEAASVMLHLRQLRIERSNYHQSFGPGPTHMDGARHVPTPSHLDLKSNIPPNFSNGIAGSPHSGTLPESPADSNRMRMSHLSSLLASLRAKYNISQNIGYIDNYASGNSRTSSLREEDTVPSSTLWINIPSNSSFFLAEDDLLAIFNLALGNFGSIVRLTQANMQMGCGWFVECSTVDAAVSVLKNLRGCPGMFFQIEFSSVIGIIIVLPSLYSQHGIQNAAAVSIKTENNSFELVSPRLKSENQGNSVCAAPLFQSNWNFSGSREMLEVGARKPDGYDNLPADPHQGGNAPHILSATQGPSIPPPQQIQSAPFIRPVYVPPNGSWDARGFNNHLPANQFKTGVMPNNFHGNAVVTPFIPASVTPLAQIQGTSMQPYNQPIPPPIVPPPLSSLPPPRPPSPPPLPHTQPPLVPPPPGSPPPPPPPPLPVQESPDIESLGKSLQYQWQGVLCKSGVIYCTIYACRTDSNTCRYSNTTPEPSEWPAKLDMTKRTDLRHVKSTFASTPQHRREVCRLIPSSTNDYKGFQDFISYLKQRDCAGVIKIPAAKSVWARLLFILPHTPETCSMLSIAPDPSDCLIGLVLPKETNFEWI 1300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g3499 1300 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 577 650 IPR000504 GO:0003723
Sto9g3499 1300 MobiDBLite consensus disorder prediction 1 57 - -
Sto9g3499 1300 MobiDBLite consensus disorder prediction 1082 1145 - -
Sto9g3499 1300 SMART rrm1_1 578 641 IPR000504 GO:0003723
Sto9g3499 1300 PANTHER NUCLEIC ACID BINDING PROTEIN 1 1299 - -
Sto9g3499 1300 CDD RRM3_Spen 579 648 - -
Sto9g3499 1300 SUPERFAMILY RNA-binding domain, RBD 565 636 IPR035979 GO:0003676
Sto9g3499 1300 MobiDBLite consensus disorder prediction 1086 1140 - -
Sto9g3499 1300 MobiDBLite consensus disorder prediction 42 56 - -
Sto9g3499 1300 PANTHER ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 2 ASC-1 COMPLEX SUBUNIT P100 1 1299 - -
Sto9g3499 1300 MobiDBLite consensus disorder prediction 18 32 - -
Sto9g3499 1300 Pfam SPOC domain 1149 1291 IPR012921 -
Sto9g3499 1300 Gene3D - 568 652 IPR012677 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g3499 K18667 - gmx:100798033 1353.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g3499 9 34229233 34237454 Sto9g3499 9 34229233 34237454 ECH